Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04263 ATGGTCATCAAGTCAGAATcagaaaagaaatcaaagaagaaaTTCAGAATGAAACACAAGCCACGAAAGTCAAATACTGGGTGTGGTAGTTCGAGGGCGTTTCATTTTCAACAAGTAGGTGACGATTGGTTACCCTTTCCCAAACACAAACACGCCGCATTCTTGGCTGATATTGCTGCGGTTAAAAAGGCTAATGCTGAGGAAAAGCCGATCTTAGATGATAACATGTTTGATAAGTACTTCCAAGAGCCGGGGAAAGTGTGCAAGTCCAAACCTATTGCCAATTGGAAAGAGCTCCTGCGTGAATCGAAAGAGAAAGAAGCTGCAAAAGCCAAGGCTAACTCTTTAAAGAGGAAGAGGAAAAAGGCTTATCAAAAGGAGCAGTtattaaagaaagaaaaggaatgTGTTTGTGAGAAACTAAAAGCCAAGAAACAAAGGCCAACAACACCAACAAACCACACAGGGCAGCAACCACCACAGCGCAACACAGAGATACCAGCAGCACCGGCGACGGAGGGAACAAAGCCGCATATCTCATCCAAGCCTCAAGGACTTACATTTACCAACCATGGTGAAATTGGGTTGATTTGTAACCTTACGAATAGCTATTGTTTGGTTGGTAGTGGAGGTTCCGAAAACTTCTACAGTTCAATTGAGGCCGAATTAGAAGATGTTATCCCTATCATCAAAACCTTCATTGGCGATAGTAGTGTTGGTCGTTATTGTATTGGAAACAAAAATGGGCTTCTCTTGCCCCACACAACCACACCCGAAGAATGGCAACATATAAGAAGAAGTCTGCCTGATGGAGTAGTTGTTGCGCCCATTGAAGAAGGATTGACTTCTTATGGACTGTTTATAGCTTGTAATGACCATGTGGCCCTCGCTCACGCTGATCTTCGCTGGGAATTTAAGGAGTTGATCACAGATGTCCTTGGGGTAGAAGTTTTCATGCCGGAAGAGTCTTGTAGATTTTATTCTGGAAGTTACTGTGCCTTGTCCAACAGAGGTGGTTTGATCAACCCTAGTGCTTCCAAAAAAGTCTTGGATGAACTTTCTGAAGCTCTTGAAGTTCCTTTGGTACCTGGGACCGTCAATCGGGGCAGCATTGCTATAAATCCTGGCATGACAGTAAATGACTGGACAGCCTTTTGTGGTTCAAGCACCACAAAAGCAGAGCTCTGTGTAATTGATAGAGCTTTCAAGCTGAGGGAACCCTAG 1224 0.4273 MVIKSESEKKSKKKFRMKHKPRKSNTGCGSSRAFHFQQVGDDWLPFPKHKHAAFLADIAAVKKANAEEKPILDDNMFDKYFQEPGKVCKSKPIANWKELLRESKEKEAAKAKANSLKRKRKKAYQKEQLLKKEKECVCEKLKAKKQRPTTPTNHTGQQPPQRNTEIPAAPATEGTKPHISSKPQGLTFTNHGEIGLICNLTNSYCLVGSGGSENFYSSIEAELEDVIPIIKTFIGDSSVGRYCIGNKNGLLLPHTTTPEEWQHIRRSLPDGVVVAPIEEGLTSYGLFIACNDHVALAHADLRWEFKELITDVLGVEVFMPEESCRFYSGSYCALSNRGGLINPSASKKVLDELSEALEVPLVPGTVNRGSIAINPGMTVNDWTAFCGSSTTKAELCVIDRAFKLREP 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04263 407 TIGRFAM eIF-6: putative translation initiation factor eIF-6 188 404 IPR002769 GO:0042256|GO:0043022
Tsu04g04263 407 Hamap Translation initiation factor 6 [eif6]. 171 407 IPR002769 GO:0042256|GO:0043022
Tsu04g04263 407 Pfam eIF-6 family 187 383 IPR002769 GO:0042256|GO:0043022
Tsu04g04263 407 MobiDBLite consensus disorder prediction 141 185 - -
Tsu04g04263 407 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 186 406 - -
Tsu04g04263 407 Gene3D - 185 405 - -
Tsu04g04263 407 SUPERFAMILY Pentein 186 404 - -
Tsu04g04263 407 MobiDBLite consensus disorder prediction 148 165 - -
Tsu04g04263 407 MobiDBLite consensus disorder prediction 11 25 - -
Tsu04g04263 407 MobiDBLite consensus disorder prediction 1 31 - -
Tsu04g04263 407 SMART eIF6neu2 184 384 IPR002769 GO:0042256|GO:0043022
Tsu04g04263 407 Coils Coil 99 133 - -
Tsu04g04263 407 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 186 406 IPR002769 GO:0042256|GO:0043022
Tsu04g04263 407 CDD IF6 186 403 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04263 Tsu-Chr4 50781055 50788366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04263 186 406 Eukaryotic Initiation Factors Gene Family AT3G55620 62.162 4.74e-93 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04263 K03264 - thj:104808899 276.174