Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04260 ATGGCTGGAGGAGCAATAGAAAACGAAAACCGTGACCAAAGGAAGAAGTTCGCCATTCTTGGCGTATCTTCAATCTTACTTATCGCCATGGTTGCTGCGGTGGCAGTAGGTATATCAAACGAAGACGCTGCCGGCGGAGGATCAGGAGGAGGTCAAACAACAATtgcaaaatcacaaaaaaatgtGCAAATAATCTGTGATGCAGCGGAGTACAAAAAAACTTGCGAGAAGAGTCTTGAAAAAGCTTCAACAGAAACCTCAGACATGAAGCAATTGATCATGGCAGCAATCAATGCAACAGCTGATGAACTCACTAGCCAGATTAATAACTCAACACTTTACAAGGAATTGGCTACCAATGACAGAACAAAACAAGCTATGGAAATTTGCAAAGAAGTCCTTGGTTATGCAGTTGATGATGTTCATACATCAATTAATACATTGGATAAATTTGAGCTAAGTAAGCTAGATGAATATGCTTATGATCTTAAGGTTTGGTTAGCAGGTACAATTACTCATCAACAAACATGTTTAGATGGATTTGAGAATACAACTACTCATGCAGGACAAACCATGGCTAAGGTTCTTAACACATCTTTGGAGCTAAGTAACAATGCTTTTGATATAATTAATGGAGTTACAAACTTTGTGAAGAGTCTTAACTTGAGTTCTTTCACAAGTGAATTGAGTAATAGGAAACTTTTGACTGATGATGAAGGTTTTCCAACATGGGCTAGTGAAAATCAAAGGAAACTTCTTGTGGCACCTGAGAGTGTTAAGCCTAATGTTGTTGTTGCTCAAGATGGTAGTGGACAGTTTAAGACTTTGACTGAGGCACTTAAACTTGTTCCTATTAAGAACAAAACTCCTTTTGTTATTCATGTTAAGGCTGGTGTCTATAATGAGTATGTTAGTTTGGATAAACATAGGGACCAAGTTACTATTATTGGTGATGGTCCTACAAAGACAAGATTTACCGGCAACAAAAACTATGTTGATGGTCTTCAGACTTTCCTTACCTCAACATTCAGTGTGAACTCTGCTCATTTCATGGCCATCAATGTCGGATTCGAGAACTCAGCAGGAGCTGAGAAGCATCAAGCAGTAGCCCTCCGTGTAACAGCCGATAAAGCAATTTTCTACAACTGTCACATGGACGGTTTCCAAGACACACTCTACGTACAATCAAAAAGACAATTCTACCGCGACTGCACCGTCTCAGGAACCATTGACTTTGTCTTTGGTGATGCTGTTGGAGTTTTCCAAAACTGCAAGTTCATCGTCAAAAAGCCATTGGAAGATCAACAATGCATGGTAACAGCAGGCGGAAGAGTCAAACCCGAGAGTCCATCCGCCCTTGTTTTCCAAAACTGTCATTTCACCGGTGAACCAGATGTAGCTACCTTGGACCCCAAGATAGCTTATTTGGGTAGACCATGGAGAAATTACTCCAAGGTTGTTATCATGGATTCTGAAATTGACGGTATCTTTGTACCAGAAGGTTATATGCCATGGATGGGAAGCGCTTTCGAAGACACGTGTACTTATTACGAATACAACAATATCGGTGCCGGTGCTAGCACTGCAGGAAGAGTGAAGTGGCCAGGTTTTAAAGTCCTTACTGCCCCTGAAGCTGGTGATTATTATCCAGGAAAGTTTTTTGAACTTGCTAACTCAACTGCTCGTGATGCTTGGATTGTTGAAGCTGGAATTCCTTATTCAATTGGACCACAAAAAGCTGGACTACTTTCACCTGCACCACAATAA 1767 0.4041 MAGGAIENENRDQRKKFAILGVSSILLIAMVAAVAVGISNEDAAGGGSGGGQTTIAKSQKNVQIICDAAEYKKTCEKSLEKASTETSDMKQLIMAAINATADELTSQINNSTLYKELATNDRTKQAMEICKEVLGYAVDDVHTSINTLDKFELSKLDEYAYDLKVWLAGTITHQQTCLDGFENTTTHAGQTMAKVLNTSLELSNNAFDIINGVTNFVKSLNLSSFTSELSNRKLLTDDEGFPTWASENQRKLLVAPESVKPNVVVAQDGSGQFKTLTEALKLVPIKNKTPFVIHVKAGVYNEYVSLDKHRDQVTIIGDGPTKTRFTGNKNYVDGLQTFLTSTFSVNSAHFMAINVGFENSAGAEKHQAVALRVTADKAIFYNCHMDGFQDTLYVQSKRQFYRDCTVSGTIDFVFGDAVGVFQNCKFIVKKPLEDQQCMVTAGGRVKPESPSALVFQNCHFTGEPDVATLDPKIAYLGRPWRNYSKVVIMDSEIDGIFVPEGYMPWMGSAFEDTCTYYEYNNIGAGASTAGRVKWPGFKVLTAPEAGDYYPGKFFELANSTARDAWIVEAGIPYSIGPQKAGLLSPAPQ 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04260 588 PANTHER PECTINESTERASE 10 580 - -
Tsu04g04260 588 CDD PMEI-like_3 65 211 - -
Tsu04g04260 588 Pfam Pectinesterase 262 553 IPR000070 GO:0030599|GO:0042545
Tsu04g04260 588 Gene3D - 259 578 IPR012334 -
Tsu04g04260 588 SUPERFAMILY Pectin lyase-like 259 554 IPR011050 -
Tsu04g04260 588 TIGRFAM PME_inhib: pectinesterase inhibitor domain 56 212 IPR006501 GO:0004857
Tsu04g04260 588 Pfam Plant invertase/pectin methylesterase inhibitor 62 207 IPR006501 GO:0004857
Tsu04g04260 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 214 IPR035513 -
Tsu04g04260 588 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Tsu04g04260 588 PANTHER PECTINESTERASE 10 580 - -
Tsu04g04260 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 213 IPR035513 -
Tsu04g04260 588 SMART PMEI_2 57 209 IPR006501 GO:0004857
Tsu04g04260 588 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04260 Tsu-Chr4 50751982 50758518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04260 8 576 Carbohydrate Esterase AT3G05610 43.979 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04260 K01051 - gmx:100800194 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04260 04 50751982 50758518 Tsu07g01814 07 18044826 18047298 PCT