Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04259 ATGGATTCTAGCGAAACCGAAGCCCAATACAACTATGGTGTTAGCGGCAAAATAATGCTAACAGCCACTATCATTCtcttcatcattatcatcataatACTCTGTCTCCATCTCTTCATTCGATGGTACCTTTTACGTTCCAGCAACCGTCAACAACACCGCCGTAACGGTAACCGTAACGTTCAACCGTTCGTTTTCTACGTTGATCATTCCGCACCTGCTTCACTGATCCTCGCCGTCTCTCGCGGACTCGATGCCTCTGTTATTTCCTCACTCCCggttttcaaattttgttcaaAGACTCATCCGGAGGGAGTGGAATGCGCGGTTTGTTTATCGGAGTTTGAAGAAGGCGAATCGGGTCGGGTTTTGCCCAAATGTAATCATAGTTTTCATATTGATTGTATTGACATGTGGTTTCAGTCTCATTCTACTTGTCCGCTTTGTAGAGCGCCTGTGGAGCCTCCTCCGGTTCAACTAACCCGATCCGAAGTGGTGATTGATGTATGTGAACCGGAATTGGTTATGGATTCGAGTTCTGAGGAAGAAACAAACCGGCCTGAACCGGTggtttcttcttcatcaaattcGAAGCAATCTTCGTTTGTTGGCGTGGCAGTTGAGATTCCAGGAAGAAGTGAATGTGAATGCGAGAGGTTCGTCGCCGGCGAGTCGAGTTGTGATTCTTCGTCGTCGTTACGATCGCCGATGAGTCGTGTGTTGTCGTTTACCAGAATTCTTAGTAGAGAGAGGAAACCGAGTGTTTCTGCCTCGTCGGATTGTGTTTCTGTGATCGAGTTAGATGACGCCGACTCAGTGAGTTGA 825 0.4461 MDSSETEAQYNYGVSGKIMLTATIILFIIIIIILCLHLFIRWYLLRSSNRQQHRRNGNRNVQPFVFYVDHSAPASLILAVSRGLDASVISSLPVFKFCSKTHPEGVECAVCLSEFEEGESGRVLPKCNHSFHIDCIDMWFQSHSTCPLCRAPVEPPPVQLTRSEVVIDVCEPELVMDSSSEEETNRPEPVVSSSSNSKQSSFVGVAVEIPGRSECECERFVAGESSCDSSSSLRSPMSRVLSFTRILSRERKPSVSASSDCVSVIELDDADSVS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04259 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 156 IPR013083 -
Tsu04g04259 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 216 - -
Tsu04g04259 274 CDD RING-H2_EL5_like 107 150 - -
Tsu04g04259 274 PANTHER RING-H2 FINGER PROTEIN ATL64 8 216 - -
Tsu04g04259 274 MobiDBLite consensus disorder prediction 176 197 - -
Tsu04g04259 274 SMART ring_2 108 149 IPR001841 -
Tsu04g04259 274 Pfam Ring finger domain 107 150 IPR001841 -
Tsu04g04259 274 SUPERFAMILY RING/U-box 88 156 - -
Tsu04g04259 274 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04259 Tsu-Chr4 50749172 50750182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04259 11 252 Rapid Response to Elicitors AT3G16720 50.201 6.19e-65 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04259 - - cpap:110815123 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04259 04 50749172 50750182 Tsu04g04259 04 50749172 50750182 ECH
Tsu04g04259 04 50749172 50750182 Tsu07g01818 07 18095170 18096487 PCT