Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04245 atGGAGAACCCTCAATATCCAAACAACAACCCTCCTCCTTCACCCTATCAACACCAACGCACCGTTTCCATTCCAAAATCACAATCGCACCATTCCGATAATAATGATCCAACCACCGCTGAGTTACGTGCTCTTGATTGTAACCTCGCTTCTCTCTGCGAACATGTTCAAATTGAAGGTTTCAATTCCGGCTCATTTTCCGATATTGTCGTTAATGCAATGGGTTCCGCTTATCATCTTCATCGTCTCATCCTCTCCCGCAGTTCATATTTCAGGAACATGCTTCATGGTCCATGGAAAGAAGCCACTGCTGCTATTGTGACCCTGCaaattgatgataacaatgttaATGACGAAGCTATTGCAATTGCTTTGGCATATCTATATGGAAACCACCCTAAACTTAACGATAATAATGCATTTCGTGTTCTTGCTGCCGCCTCTTTTCTTGACCTTCAGGATTTATGCGCTATATGTACAGATTTCATTATATCTGAGCTGTGGACTTCAAACTTCTTGGCTTATCAGGTGTTTGCGGAGAACCAAGATTACGGCATTCATGGGGAGCGTGTTAGAACTGCTTGTTGGGGCTACCTTTGTCAAAGTGGGGGCATGGAATTGAGAGAGGTGCTTCCTAAACTTTCATCTCATACGTTACATGCATTACTGACCTCTAATGATCTGTGGATATCCTGTGAAGAGAAGCGGTATGAATTGGCTTTGCACACATTCCTGGCAAAAAGTGCTCACTGCAAGATTGAACATCCTGCACATGGAATTCCTGATTCTGAGTCTGCAACTGGCATTCATTCTGATTCTGGTAACACCAAGGGTAAAGGTATCATTGATAGCTGCACAAATGAGAGGTTGGAAACTGACTTGGGGAAAATAAGTCTTAAAAGTGATCTAAAGGACCCTAGCATGCCTAATCTTttagttgagcttgcaaactcAGCAGTAGACTTCAACAATGGCATTTCTGATTCTAATCAACGGGTTCAACTTGCTTCATATGTCAGTTCACCAAACTTGAATCCAAGATATCCTTGTGACATGGAAGGGACTTCATTGGGTAATTCATTGTCTGATACAGATGGGACGAGAACATCTTGTTATGTTGAGGTGCCTCTTGATGCTGGAACAATAACTGGAGTGGGTATTGAAGGGCCGTCTGAGGAAGGAGGTTGCTACCATTCGGATAACAACAATAGGTTGGTCAGGGATCAATCAAGACATTGTTTTTCATCGAGTTCTTCTAATGGGCCCACATCCAGTGATTGGGGAAGATATGGAACACCTTTGCTTTCATGGGGTGGCCATGTTGGCAGAAGACAGGTCAAAGCTCATCCCAGAGGAAACTATGGAGATGAAGACGATgtatttcttaatatatttgAAGGGGGGTCACTTTTATATTGCAATATGTCTTTTGATGCACTTTTAAATGTCAGAAAGCAGCTTGAAGAAATAGGATTCCCATGCAAAGCTGTAAATGATGGTCTGTGGCTGCAGATGCTTCTTAGTCAGAGGGTTCAAGAGATTGCTGCTGATACATGCAGAGTTTGTTCACTTATGACTATGTCTTGTACTTGCCAAAAGCAGTTTGCATTTTTACATGGATCTACTACCACTGGATCTTACATGCAAGAACATAATCATAACAATATGCCTGGCGGTGGAGGAAATATATATGTTGCTGAATCTTCTACAGGAGAAAGAAATGGCTCTTTTAGACCGGTACGAGTACATGTTCGAGGTGCTATTGATGGGCTTGCGGGTATTGGCCGTGGAACTACATTTGTTCCTGCAGCAGCTTCTCCTCCTACACGATTTGTCTTTTCTCGTGTACCATTTGGCGTTGGCAACAGAAACTACCCTCAATCTGCCGCCAATGATGATTCAGAGGCACGTGCTGATCACAATGGAGACCTGTCTGGAGATGGACTGACAGCTTTAGTTGGGCTAAGCCAGGGAGGGAATTATGGAACAAATGTAAATACAGAGCTAACACAAAGGGGGCATGAAATGGGCATGCAAAGTACTGCTGGCGGTGCAAGTACTGGTGGCATTCCTGTACAGATGTTAGAGACACCAGAACATACCGTTGGTATAGAATGGGAGAATGACAACAGTTCTTCTATATCATTGGATTTGAAAACACCTCTAAGCCATTTCCCCCCTTTTCGCTTTGGTGTAAGTTTTGAGGAAGTGCACAGGCTTGGTGATGGCCAGGTCAAGCATTCACCAGAAGTTTTCTATGCTGGTTCTTTATGGAAGGTCAGTATTCAGGCTTTTAATGATGAAGACCCCCAGGGACGGCGTACCCTTGGGTTGTTTCTTCACCGTCGGAAGGCAGAGATAAGTGATGTACACAGGAAGGTACATATGTATGTTGACTCGCGTGAAAAGGTGACTGCACGGTATCAGTTGACTTGCCCATCCAAGAGGGAAATGTTAGTGTTTGGAAGCTTTAAACAAACGGGCACTCTTCTACCCAAAGCTCCTAAAGGATGGGGTTGGCGAACTGCTCTGCTATTTGATGAACTTGCTGATCTTCTCCAAAACGGGGCCCTAAGGGTTATCGCTGTAGTGCAGCTTGTTTGA 2604 0.4316 MENPQYPNNNPPPSPYQHQRTVSIPKSQSHHSDNNDPTTAELRALDCNLASLCEHVQIEGFNSGSFSDIVVNAMGSAYHLHRLILSRSSYFRNMLHGPWKEATAAIVTLQIDDNNVNDEAIAIALAYLYGNHPKLNDNNAFRVLAAASFLDLQDLCAICTDFIISELWTSNFLAYQVFAENQDYGIHGERVRTACWGYLCQSGGMELREVLPKLSSHTLHALLTSNDLWISCEEKRYELALHTFLAKSAHCKIEHPAHGIPDSESATGIHSDSGNTKGKGIIDSCTNERLETDLGKISLKSDLKDPSMPNLLVELANSAVDFNNGISDSNQRVQLASYVSSPNLNPRYPCDMEGTSLGNSLSDTDGTRTSCYVEVPLDAGTITGVGIEGPSEEGGCYHSDNNNRLVRDQSRHCFSSSSSNGPTSSDWGRYGTPLLSWGGHVGRRQVKAHPRGNYGDEDDVFLNIFEGGSLLYCNMSFDALLNVRKQLEEIGFPCKAVNDGLWLQMLLSQRVQEIAADTCRVCSLMTMSCTCQKQFAFLHGSTTTGSYMQEHNHNNMPGGGGNIYVAESSTGERNGSFRPVRVHVRGAIDGLAGIGRGTTFVPAAASPPTRFVFSRVPFGVGNRNYPQSAANDDSEARADHNGDLSGDGLTALVGLSQGGNYGTNVNTELTQRGHEMGMQSTAGGASTGGIPVQMLETPEHTVGIEWENDNSSSISLDLKTPLSHFPPFRFGVSFEEVHRLGDGQVKHSPEVFYAGSLWKVSIQAFNDEDPQGRRTLGLFLHRRKAEISDVHRKVHMYVDSREKVTARYQLTCPSKREMLVFGSFKQTGTLLPKAPKGWGWRTALLFDELADLLQNGALRVIAVVQLV 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04245 867 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 13 867 - -
Tsu04g04245 867 MobiDBLite consensus disorder prediction 15 39 - -
Tsu04g04245 867 Gene3D Potassium Channel Kv1.1; Chain A 39 200 IPR011333 -
Tsu04g04245 867 ProSiteProfiles BTB domain profile. 67 137 IPR000210 GO:0005515
Tsu04g04245 867 SUPERFAMILY POZ domain 61 165 IPR011333 -
Tsu04g04245 867 MobiDBLite consensus disorder prediction 266 282 - -
Tsu04g04245 867 MobiDBLite consensus disorder prediction 259 282 - -
Tsu04g04245 867 MobiDBLite consensus disorder prediction 625 645 - -
Tsu04g04245 867 SMART BTB_4 67 167 IPR000210 GO:0005515
Tsu04g04245 867 MobiDBLite consensus disorder prediction 1 39 - -
Tsu04g04245 867 Pfam BTB/POZ domain 61 165 IPR000210 GO:0005515
Tsu04g04245 867 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 13 867 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu04g04245 BTB 2.5e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04245 - - gmx:100806711 1436.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04245 04 50652199 50658074 Tsu04g04245 04 50652199 50658074 ECH