Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04242 ATGGCGGATTCGTTAGGGCAAAATTGGAAGAATCGAGACTTCACTCTTTCATCGGTTTCCGACCTCTCTTCCTCCGATGTTTCATCGCCGGGAATTGCTCGCTTCACATCCGATGctcttcaaattcatcctgaATCTCCACAGATTCCTCTCAATTTCGATCTCAGAACTGCTCAGATATTGAAATTGGGTCCTGTTCAATCCCTTTGTATTACGGAAGGTTCTGATGACGGTAAATCGGGATCATATTCTACGGGAGTCAATATCCAGTTTAAAAACGAGGAGGATTGTGCGGCCTTCCACTCTGCAGTCCAACAATGGATAAAGGAAAACAATGTTCAAGGAAACTTGCCAAATGGAACTTTAACAACATCTAAAAGCAAATTTGATGAAAAGATAGAACCATCTTCTGCAAAAATGTATTTTCATTATTATGGACAACTTCTTCATCAGCAAAACATGTTACAGGACTATGTTCGGACAGgAACTTATTATGCTGCGGTTATTGAGAACCGTGCTGATTTTACTGGTCGTGTAGTAGTTGATGTGGGTGCTGGTAGCGGTATTTTGTCATTGTTTGCTGCTCAGGCCGGTGCCAAACATGTTTATGCCGTGGAAGCCTCTGAAATGGCAGAATATGCACGTAAACTCATAGCTGGGAACCCAAAATTGGCTCAACGAATTACAgTGATTAAAGGTAGAGTTGAGGATGTTGAGTTGCCAGAGAAGGCAGATATTCTGATCTCAGAGCCCATGGGCACTTTGTTAGTTAATGAGAGAATGCTGGAGTCTTATGTCATTGCCAGAGATAGGTTTCTCACTCCTACTGGGAAAATGTTTCCTGGGGTGGGAAGGATTCACATGGCACCTTTCACTgatgaatatttgtttattgAAATTGCTAATAAGGCCCTATTCTGGCAGCAGCAAAATTATTATGGTGTTGATTTGACACCCTTACACGGGACTGCATTTCAAGGATATTTTTCTCAGCCTGTGGTGGATGCTTTTGATCCAAGATTGTTAATAGCTCCCCCAATGTTCCATGTATTAGACTTCGGCAAAATGAAGGAAGAAGAATTGTATGAAATTGACATTCCTCTGAAATTCATTGCCTCTGTGGGCACCAGAGTACACGGGTTGGCATGTTGGTTTGATGTACTGTTCAATGGAAGTACTGTGCAAAGGTGGCTTACCACTGCTCCTGGTTCACCCACAACCCATTGGTACCAGCTACGCTGTGTTCTCTCTCAGCCAATTTATGTCATGGCAGGGCAAGAAATTACCGGCAGGCTTCATTTGATTGCACACAATGCACAGAGTTATACAATATATTTAACATTGTCTGCTAAAATGTGGGGTCCTGGTGCTGAACAAGGAGGGATTCTTCAAACATCTTCTTGTAAGCTTGATCTCAAAGAGCCCTACTATAGAATGTCCCAACCACAAGCTTATCCATTAGCCCAAGATCAGCAAACTCAACCACTTGTACAAACACAGGAATTGGAAGAACCAGAAATAATGCAACAGCTTTCGCCTAATTCTTGTGCTCAGATTGATTCACTGATGCAGAAGATTTAA 1581 0.4143 MADSLGQNWKNRDFTLSSVSDLSSSDVSSPGIARFTSDALQIHPESPQIPLNFDLRTAQILKLGPVQSLCITEGSDDGKSGSYSTGVNIQFKNEEDCAAFHSAVQQWIKENNVQGNLPNGTLTTSKSKFDEKIEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFTGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPKLAQRITVIKGRVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLTPTGKMFPGVGRIHMAPFTDEYLFIEIANKALFWQQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAPPMFHVLDFGKMKEEELYEIDIPLKFIASVGTRVHGLACWFDVLFNGSTVQRWLTTAPGSPTTHWYQLRCVLSQPIYVMAGQEITGRLHLIAHNAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYPLAQDQQTQPLVQTQELEEPEIMQQLSPNSCAQIDSLMQKI 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04242 526 Gene3D - 283 491 - -
Tsu04g04242 526 CDD AdoMet_MTases 180 280 - -
Tsu04g04242 526 Gene3D Vaccinia Virus protein VP39 120 281 IPR029063 -
Tsu04g04242 526 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 9 489 IPR025799 GO:0016274|GO:0018216
Tsu04g04242 526 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 144 455 IPR029063 -
Tsu04g04242 526 Pfam Ribosomal protein L11 methyltransferase (PrmA) 176 250 - -
Tsu04g04242 526 PANTHER HISTONE-ARGININE METHYLTRANSFERASE 1.4-RELATED 9 489 - -
Tsu04g04242 526 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 134 449 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04242 Tsu-Chr4 50626890 50633038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04242 141 430 C2H2 Transcription Factor Family AT3G12270 34.091 1.22e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04242 K05931 - gmx:100780736 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04242 04 50626890 50633038 Tsu07g01854 07 18570345 18577242 PCT