Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04235 ATGCTTAGTCCTGAAggagaaattaaaataagttttgGATACAAATGCAATAGTGATGGAGGTATCCCTAGCGAGATTGCCAATGGCTACAAAAATCTTACCATAGTCCGTAGAGCAAGTAGTTTCTCTTGTTTGTCAGGTGCAGCCATAAGTGCAAATGCTACGCTAGCCAACACAAACATATGCAATGGTAAGATAAGTGATGAAATCCTTCCAAGTTGGGATTCTCCTAATTCGTTTCGTAGAGTACCTTCTTCGCCAAGTTTTTCACGGTTCGACAGACTATCGTCTTCGCTCCCAAATAGTCTCTCTTATCTAAGTAGCAGTCCTTCCACTACCAGTGATAGCCTTGAGTATGCGAGTGATCGTCCCAGTACCGACGGTTTTCTTATTGCTAAAGAAGTTCAAGTAGCAGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGTTGGCTCTTTTGTGCAATTTATGATGGATTTAATGGAAGAGATGCAGCTGATTTTCTGGCCGGTACCCTCTACGAAACCATCATATCTTACCTAGATAAGTTAATTTGGGAATTGGAGCCGGGTTCCATCACAACTTCCAACCATGCGGATTTGGGTGAATACCTTCGATGTAAGTTGGATGATAGTCTTCATTGTCACGAGGATCATTCTCTGTCAAAATCATCACGGGAGTCTTTTTCGCGTGGGGTACTTGATAGCCTCGACCGTGCTCTTAGTCAGGCTGAGAATGActtcttgtacatggttgagcAGGAAATGGGAGAACGTCCGGATTTAGTTTCTATTGGATCTTGTgttttgcttttgcttcttcatgGTAATGATTTGTATACACTGAATCTTGGTGACAGTAGAGCAGTACTAGCGACGTGCAGTAGCGGTGACGGAATGAATAAGAGTGAGAGACTCAAGGCTATACAGCTTACAGATAGTCACACTGTTGATAATGAAGCTGAAAGGACTAGACTCGTGGCTGATCATCCCGATGATCCCAAGGTCGTCATAGCAGGAAAAGTGAAAGGTAAGTTGAAGGTTACTCGTGCATTTGGAGTTGGCTACTTGAAAAAGAAAAATCTGAATGATGCTTTGATGGGAATCCTAAGAGTTCGCGATCTTATAAGCCCGCCATATGTTTCCACTCAACCATCATTGAATGTGCATAAAATCTCAAATTCTGATCAATTTGTTATAGTAGGGAGTGATGGTTTATTTGACTTCTTCAGCAATGAAGAGGCAGTGAATCTTGTAGAGTCTTATATCTTAACCAATCCTTTTGGTGATCCTGCAAAGTTTCTCATAGAGCAGCTTGTAGCTCGAGCAGCTGATTCCGCAGGTTTCAGCATGGAAGAGTTGATGAATGTTCCTGCCGGAAGGAGAAGAAAGTACCATGATGATGTTACTGTAATGGTGATCATGCTTGGAATGAATCAGAGAACTTCAAAAGCTTCAACTTGTATCTAA 1488 0.4046 MLSPEGEIKISFGYKCNSDGGIPSEIANGYKNLTIVRRASSFSCLSGAAISANATLANTNICNGKISDEILPSWDSPNSFRRVPSSPSFSRFDRLSSSLPNSLSYLSSSPSTTSDSLEYASDRPSTDGFLIAKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIISYLDKLIWELEPGSITTSNHADLGEYLRCKLDDSLHCHEDHSLSKSSRESFSRGVLDSLDRALSQAENDFLYMVEQEMGERPDLVSIGSCVLLLLLHGNDLYTLNLGDSRAVLATCSSGDGMNKSERLKAIQLTDSHTVDNEAERTRLVADHPDDPKVVIAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRDLISPPYVSTQPSLNVHKISNSDQFVIVGSDGLFDFFSNEEAVNLVESYILTNPFGDPAKFLIEQLVARAADSAGFSMEELMNVPAGRRRKYHDDVTVMVIMLGMNQRTSKASTCI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04235 495 PANTHER PROTEIN PHOSPHATASE 2C 2 494 IPR015655 GO:0004722|GO:0006470
Tsu04g04235 495 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 2 494 - -
Tsu04g04235 495 CDD PP2Cc 142 480 IPR001932 -
Tsu04g04235 495 Gene3D - 96 491 IPR036457 -
Tsu04g04235 495 SMART PP2C_4 120 480 IPR001932 -
Tsu04g04235 495 SUPERFAMILY PP2C-like 143 483 IPR036457 -
Tsu04g04235 495 ProSiteProfiles PPM-type phosphatase domain profile. 130 482 IPR001932 -
Tsu04g04235 495 Pfam Protein phosphatase 2C 230 437 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04235 Tsu-Chr4 50584736 50586689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04235 4 495 PP2C-type Phosphatase Gene Family AT3G16560 61.553 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04235 - - gmx:100808304 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04235 04 50584736 50586689 Tsu07g01863 07 18696959 18698914 PCT