Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04226 ATGTTTAATTATCACCGCCTTAGAGCTATTCTCAACCCTCAAATCCCAAAATGTTACCTTCTTCACCCAATCCACTCTCTCAAACCATTCTCCACCATCACCATCACTTCAGATTCAGATCAACAATCTTTCACTGTTTCATATCTCACCAACACTTGCGGTTTATCACCACAAAAAGCTCTTAAAGCATCAAAACAAATTAGTTTCAACACTCCCAATAAACCCGATTCCGTTATCGCCTTCTTCAAAACTCACGGTTTCTCCAATGATCAGATACAATCCATCATTCACAAAGCACCAGTACTCTTAACATTCGACCCCATCAAAACCATTTTgccaaagtttcaatttttatccTCCAAAGGTGCTTCTTCATCTGACATTGTTGACACTGTCACCAGAGCCCCTAATTTCCTCCGTGCAAGCCTTGACAAACAATTAATCCCTGCTTTTCAATTGGTAAGAAATTTCTGTCCCTCTGATAAAAAAGCTCTTACTTCAATTATTGCTTGTCCTACTTCTATTAGTGATATTCGTATGAAACCAAATATTCAACGTTTGCTTGATTTTGGGGCCACTCCTTCAAGCATTTACCGTTTGCTTACTACTAGACCTTCCATAATTTGTTCTTCTGATTTGAGGAATGTTTTGGAGGAGATTAAGGAATTAGGGTTTGATCCTTCATCATACAAGTTTTGTATGGCATTATTGGCCAAAAGGGCTACCACTAAATCCCAATGGGATGCTAAAGTTGATGCCTTGAAGAGTTGGGGTTGTTCGgaagatgaaatttttaatgCTTTTAAAAAACAGCCTAACATTATGCTACGGTCTCCGGATAAATTGAAAGCGGTCATGCGTTTTTGGATCAAACAGCTTGGTTGGGATCCTTCATTGCTCCTGTCAGCTCCTGATCTTTTCGGATTTAGTATAGAGAAAAGGTTTATTCCGAGGGCTTCTGTTGTTCAGTATCTTCTTTCCAAAGGTTTGATGAAGAAAGATGCAAGCTTAACTACACCATTTTATGTGACTGATGAGGTGTTCCAGCAAAGGTATGTGAATCGTTTTGAGAAGGATGCATATAGGCTATTAAAGCTATATAAGGGGGAGGATTCTAGCATCCGGTGTCTGGATAAGTTGTCAAAGCATATTTTGGTGTAA 1161 0.3798 MFNYHRLRAILNPQIPKCYLLHPIHSLKPFSTITITSDSDQQSFTVSYLTNTCGLSPQKALKASKQISFNTPNKPDSVIAFFKTHGFSNDQIQSIIHKAPVLLTFDPIKTILPKFQFLSSKGASSSDIVDTVTRAPNFLRASLDKQLIPAFQLVRNFCPSDKKALTSIIACPTSISDIRMKPNIQRLLDFGATPSSIYRLLTTRPSIICSSDLRNVLEEIKELGFDPSSYKFCMALLAKRATTKSQWDAKVDALKSWGCSEDEIFNAFKKQPNIMLRSPDKLKAVMRFWIKQLGWDPSLLLSAPDLFGFSIEKRFIPRASVVQYLLSKGLMKKDASLTTPFYVTDEVFQQRYVNRFEKDAYRLLKLYKGEDSSIRCLDKLSKHILV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04226 386 Pfam mTERF 246 349 IPR003690 GO:0003690|GO:0006355
Tsu04g04226 386 Pfam mTERF 80 225 IPR003690 GO:0003690|GO:0006355
Tsu04g04226 386 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 17 370 - -
Tsu04g04226 386 PANTHER CGI-12 PROTEIN-RELATED 17 370 IPR003690 GO:0003690|GO:0006355
Tsu04g04226 386 Gene3D Transcription termination factor 3, mitochondrial 167 362 IPR038538 -
Tsu04g04226 386 SMART mt_12 198 226 IPR003690 GO:0003690|GO:0006355
Tsu04g04226 386 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Tsu04g04226 386 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Tsu04g04226 386 SMART mt_12 129 161 IPR003690 GO:0003690|GO:0006355
Tsu04g04226 386 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04226 Tsu-Chr4 50523737 50525036 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu04g04226 mTERF 6.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04226 K15032 - gmx:102666739 349.747