Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04225 ATGTTTCATTATCACCGCATCAGAACTCTCTTCTACCCCCAATCCCCAAAATGTTACCTTCTTCACCCAACCCACTTTCTCAAACCATTCTCCACCATCACCATCACTTCAGATTCAGATCAACAATCTTTCACTGTTTCATACCTCACCAATACTTGCGGTTTATCACCACATAACGCCCTTAAAGCATCAACACGACTTCGTTTCAACACCCCCAAAAAACCCGACTCAGTTATCGCCTTCTTCAAAACTCACGGTTTCTCCAATGAACAGATACAATCCATCATCCACAGAGCACCAGGACTCTTAACATTCGACCCCATCAAAACCATTTTgccaaagtttcaatttttatccTCCAAAGGTGCTTCTTCATCTGACATTGTTGACACCATCACCAGAAGCCCCCATTTTTTGTGTACAAGCCTTCAGAAACAGATAATCCCTTCTTTTGAATTGGTAAGAAGTTTCTGTCCTTCTGATCAAAAAGCTCTTACTTCAATTATTGCTTGTCCTTCTATCATTAGACATGGCCACATGAAactaaatgtgaattttttgcTTGATTTTGGGGTCACTCCTGCAAGCATTTACTGTTTGCTTACTACTAGACCTTCTATAATTTGTTCTAATGATTTCAAAAAACTTGTTGAAGAGATTAAAGAATTAGGGTTTGATCCTtctaaatacaatttttgtgtGGCATTATTAGCCAAAAGGGCTATCACCAAATCCCAATGGGATGCAAAAGTTGATGCCTTCAAGAATTGGGGTTTTTCTGAAGATCAAATTTTTAATGCTTTTAAAAAACAGCCTCGTTTTATGCTACGGTCTCCGGACAAACTGAATGCGGTGATGCATTTTTGGATCAAGCAGCTTGGTTGGGATCCTTTTTTGCTCCTAGCAGCACCCGATCTTTTCGGATTTAGTTTAGAGAAAAGGCTTATTCCAAGGGCTTCTGTTGTCCAGTATCTTCTTTCCAAAGGTTTGTGGAAGAAGGATGCCAGCTTAATTACACCATTTTATAGGACTGACGAGTTGTTCCTGCAAAAATATGTGAATCATTTTGAGGAGGAAGCATATAGTCTATTAAAGCTATATCAGGGGGAGGATGCTAGCACAGATTGCCTGGATAAGCTGTCAAAGCATAGTTTGGTGTAA 1161 0.3807 MFHYHRIRTLFYPQSPKCYLLHPTHFLKPFSTITITSDSDQQSFTVSYLTNTCGLSPHNALKASTRLRFNTPKKPDSVIAFFKTHGFSNEQIQSIIHRAPGLLTFDPIKTILPKFQFLSSKGASSSDIVDTITRSPHFLCTSLQKQIIPSFELVRSFCPSDQKALTSIIACPSIIRHGHMKLNVNFLLDFGVTPASIYCLLTTRPSIICSNDFKKLVEEIKELGFDPSKYNFCVALLAKRAITKSQWDAKVDAFKNWGFSEDQIFNAFKKQPRFMLRSPDKLNAVMHFWIKQLGWDPFLLLAAPDLFGFSLEKRLIPRASVVQYLLSKGLWKKDASLITPFYRTDELFLQKYVNHFEEEAYSLLKLYQGEDASTDCLDKLSKHSLV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04225 386 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 16 370 - -
Tsu04g04225 386 PANTHER CGI-12 PROTEIN-RELATED 16 370 IPR003690 GO:0003690|GO:0006355
Tsu04g04225 386 Pfam mTERF 246 348 IPR003690 GO:0003690|GO:0006355
Tsu04g04225 386 Pfam mTERF 80 226 IPR003690 GO:0003690|GO:0006355
Tsu04g04225 386 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Tsu04g04225 386 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
Tsu04g04225 386 SMART mt_12 165 193 IPR003690 GO:0003690|GO:0006355
Tsu04g04225 386 SMART mt_12 198 226 IPR003690 GO:0003690|GO:0006355
Tsu04g04225 386 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Tsu04g04225 386 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Tsu04g04225 386 Gene3D Transcription termination factor 3, mitochondrial 176 365 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04225 Tsu-Chr4 50516502 50517662 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu04g04225 mTERF 2.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04225 K15032 - gmx:102666622 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04225 04 50516502 50517662 Tsu07g01892 07 19092485 19093627 PCT