Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04224 ATGTTTCATTATCACCGCCTCAGAACTCTCCTCAACCCCCAAATCCCAAAATGCTACCTTCTTCACCGAACCCACTTTCTCAAACCATTCTCCACCACCACTTCAGATTCAGATCAACAATCTTTCACCGTTTCATACCTCATCAACACTTGCGGTTTATCACCACAAAAAGCTCTTAAAGCATCAAAACGACTTCGTTTCAACACCCCCAAAAAACCCGATTCAGTTATCGCTTTCTTCAAAACCCACGGTTTCTCCAATGAACAGATAAAATCCATCATTCACAAAGCACCATTACTCTTAACATCCAACCCCATCAAAACCATTTTgccaaagtttcaatttttatccTCCAAAGGTGTTTCTCTTAACACTGTCACCAGAAGCCCCCGTTTTCTAACTTCAAGCCTTCAGAAACAGACAATCCCTACTTTTGAATTGGTAAAAAGTTTATGTCCCTCTGATCAAAAAGCTCTTACTTCAATTCTTTGTCCTTCTTCTATTGTATATTGCCGCATGAAACCAAATGTTGAATTTTTGCTTGATTTTGGGGTCACTCCTTCAAGCATTTACCGTTTGCTTACTACTAGACCTTCTATGATTTGTTGTACTACTACTAATTTGAAAAAACTTGTTGAAGAGATTAAAGAATTAGGGTTTGATCCTtctaaatacaatttttgtgtGGCATTATTAACCAAAAGGGCTATCACCAAATCCCAATGGGTTGCAAAAGTTGATGCCTTCAAGAATTGGGGTTTTTCTGAAGATCAAATTTTTAATGCTTTTAAAAAACAGCCTAGTTTTATGCTACGGTCTCCGGACAAACTGAATGCGGTGATGCATTTTTGGATCAAGCAGCTTGGTTGGGATCCTTTATTGCTCCTAGCAGCACCCGATCTTTTCGGATTTAGTTTAGAGAAAAGGCTTATTCCAAGGGCTTCTGTTGTCCAGTATCTTCTTTCCAAAGGTTTGATGAAGAAAGATGCCAGCTTAACTACACCGTTTTATTTTACTGATGAGTTGTTCCTGCAAAAATATGTGAATCGTTTTGATGAGGAAGCATATAGGCTATTAAAGCTATATCAGGGGGAGGGTGCTAGCATCCGAACCCTCTTCTACTCCCAAACCCCAAAATATTACCTTCTTCACCCAACCCACTTTCTCAAACCATTCTCCACAACCACCACCACTTCAAATTCAGATCAACAATCTTTCACAGTTTCATACCTCACCAACACTTGCGGTTTATCACCACAAAACGCTCTTAAAGCATCCAAACGACTTTGTTTCAACACCCCCAAAAAACCCGATTCTGTTATCACCTTCTTCAAAACCAACGGTTTCTCAAATGGTGCTTCTCCATCTGACATTGTTGACACCATCACCAGAAGCCCCCATTTCTTGTGTTCAAGCCTTCAGAAACAGATAATCCCTTCTTTTGAATTGGTTTTGGAGGAAATTAAGGAATTAGGGTTTGGTCCTTCATCATACAAGTTTGTTACGGCATTATTGGCCAAAAGGGTTATCGCCAAATCTCAATGGGATGCTAAAATTGATGCCTTGAAGAGTTGGGGTTGTTCTGAAGATCAAATTTTTAATGCTTTTAAAAAACAGCCTAACATTATGCTACGGTCTGCGGACAAATTGAATGTTGTGATGCATTTTTGGATCAAACAGCTTGGTTGGGATCCCTTATTGCTCCTGTCAGCTCCTGATCTTTTCGGATTTAGTATAGAGAAAAGGCTTATTCCAAGGGCTTCTGTTGTCCAGTATATTCTTTCCAAAGGTTTGATGAAGAAGGATGCCAGCTTAATTACACCATTTTGTTTGACTGATGAGTTGTTCCTGCAAAGATGCTCCCACGGTGCGAAGGGCCACGAACTTAAGATAGGGCTAAGTGGGGTTGATGGCCTTTTAAGCTACGAAAAAAGGAAGTGGCAAAGGGTCTTAAAAGGCCAAGGAGAAGGTGAGAGGAAGGTTCAAACAGGAGTCAGTCGTTCTGCCATTGATTACATGCAAACCTGCAACCATCAAACCAGAGACCAAAGCAGGGCAAACCTGAGACGGGCGACCACGGTCCCGACCTTATCAGCACCGGAGGTGTTTCCAGTTTTTCGGTCCCCGATTATAAGTTCAGGCCAAGCACAACTGAGTTTGTGTCCGTGTAGTAGTAGTCGGAGACGCTATGCCAGATAG 2199 0.4065 MFHYHRLRTLLNPQIPKCYLLHRTHFLKPFSTTTSDSDQQSFTVSYLINTCGLSPQKALKASKRLRFNTPKKPDSVIAFFKTHGFSNEQIKSIIHKAPLLLTSNPIKTILPKFQFLSSKGVSLNTVTRSPRFLTSSLQKQTIPTFELVKSLCPSDQKALTSILCPSSIVYCRMKPNVEFLLDFGVTPSSIYRLLTTRPSMICCTTTNLKKLVEEIKELGFDPSKYNFCVALLTKRAITKSQWVAKVDAFKNWGFSEDQIFNAFKKQPSFMLRSPDKLNAVMHFWIKQLGWDPLLLLAAPDLFGFSLEKRLIPRASVVQYLLSKGLMKKDASLTTPFYFTDELFLQKYVNRFDEEAYRLLKLYQGEGASIRTLFYSQTPKYYLLHPTHFLKPFSTTTTTSNSDQQSFTVSYLTNTCGLSPQNALKASKRLCFNTPKKPDSVITFFKTNGFSNGASPSDIVDTITRSPHFLCSSLQKQIIPSFELVLEEIKELGFGPSSYKFVTALLAKRVIAKSQWDAKIDALKSWGCSEDQIFNAFKKQPNIMLRSADKLNVVMHFWIKQLGWDPLLLLSAPDLFGFSIEKRLIPRASVVQYILSKGLMKKDASLITPFCLTDELFLQRCSHGAKGHELKIGLSGVDGLLSYEKRKWQRVLKGQGEGERKVQTGVSRSAIDYMQTCNHQTRDQSRANLRRATTVPTLSAPEVFPVFRSPIISSGQAQLSLCPCSSSRRRYAR 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04224 732 Gene3D Transcription termination factor 3, mitochondrial 161 360 IPR038538 -
Tsu04g04224 732 Gene3D Transcription termination factor 3, mitochondrial 389 624 IPR038538 -
Tsu04g04224 732 PANTHER CGI-12 PROTEIN-RELATED 376 451 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 Pfam mTERF 239 343 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 Pfam mTERF 434 616 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 Pfam mTERF 78 221 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 PANTHER CGI-12 PROTEIN-RELATED 450 484 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 PANTHER CGI-12 PROTEIN-RELATED 485 619 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 PANTHER CGI-12 PROTEIN-RELATED 16 365 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 16 365 - -
Tsu04g04224 732 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 450 484 - -
Tsu04g04224 732 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 485 619 - -
Tsu04g04224 732 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 SMART mt_12 459 494 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 SMART mt_12 123 154 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 SMART mt_12 565 599 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 SMART mt_12 191 221 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 SMART mt_12 292 326 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 SMART mt_12 160 186 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 SMART mt_12 533 564 IPR003690 GO:0003690|GO:0006355
Tsu04g04224 732 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 376 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04224 Tsu-Chr4 50506216 50514255 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu04g04224 mTERF 9.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04224 K15032 - gmx:102667698 321.627