Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04223 ATGTTTCACCTTCACCGTCACCGTCTCAGAGCTCTCCTCCACCTCAACGATCTTTCCCAAACCTCAAAATgccactttcttcttcttcaaccccACTTTCTCAACCCATTCTCCACCACCACAACTTCAGATTCAAATCAACAATCTTTCACCATATCATACCTCACCAACACCTGTGGCTTATCTCCACAAGATGCTCTCAAAGTATCCAAACGACTTCGTTTCAAAACCCCCAAAAAACCTGATTCCGTTACCACTTTCTTCAAAAACCAcggttttttcattcaaaacataCAATCCATCATTCTTAAGGATCCTGAGCTATTAGTCTCAAACCCCATCAAATCAATTTTaccaaagtttcaatttttagcTTCCAAAGGTGCTTCTCCTTCTGACATTGTTGCCACTGTAACAAGATGTCCTCGTTTTCTCCGTGTAAGTCTCGAAAAACACATTATCCCTGCTTTTGATTTGGTACGAAGTTTTTGTCCCTCTAATCAAAAAGCTATTGATTCTATAATTGCTTGTCCAACTTCAATTAGTGATGTTAGAATGAAACGAAATGTGaaatttttgattgattttggtTTCCCTGGTTCAAGTATTTACCATTTACTTAGGACTAGACCTTCTATAATATGTTCTACTGATTTGAAAAATGCTGTTGAGGAGATTAAGGAATTAGGGTTTGACCCTTCAAAAGTTTATTTTAGTGTTGCATTATTGGCCAAAAGGGCTATCACCAAATCTCAATGGGATGCTAAAGTTGATGTCTTGAAGAGTTGGGGTTATTCTGAAGATGAAATTTTGAATGCATTTAAGAGGCACCCTAATTTTATGCTACGGTCTCCGGATAAACTTAATGCGGTTATGAGTTTTTGGGTCGATGGGCTTGGTTGGGATCCTTCGGCACTATTGGCTACTCCGATACTTTTTGGGTTTAGTATAGAGAAAAGGCTTAGTCCAAGGGCTTCAATTGTCAAGTATCTTCTATCCAAAGGTTTGTTAAAGGAGGGTGCTTGTTTATGTACACCATTTAACTTGAGTGACGAGGATTTCCAGCGAAGGTATGTGAAACGTTTTGCGCTGGATACATCTAAGCTATTAAAGCTAAATAAGGGAGAATGCTAG 1134 0.3624 MFHLHRHRLRALLHLNDLSQTSKCHFLLLQPHFLNPFSTTTTSDSNQQSFTISYLTNTCGLSPQDALKVSKRLRFKTPKKPDSVTTFFKNHGFFIQNIQSIILKDPELLVSNPIKSILPKFQFLASKGASPSDIVATVTRCPRFLRVSLEKHIIPAFDLVRSFCPSNQKAIDSIIACPTSISDVRMKRNVKFLIDFGFPGSSIYHLLRTRPSIICSTDLKNAVEEIKELGFDPSKVYFSVALLAKRAITKSQWDAKVDVLKSWGYSEDEILNAFKRHPNFMLRSPDKLNAVMSFWVDGLGWDPSALLATPILFGFSIEKRLSPRASIVKYLLSKGLLKEGACLCTPFNLSDEDFQRRYVKRFALDTSKLLKLNKGEC 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04223 377 PANTHER CGI-12 PROTEIN-RELATED 19 375 IPR003690 GO:0003690|GO:0006355
Tsu04g04223 377 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 19 375 - -
Tsu04g04223 377 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Tsu04g04223 377 SMART mt_12 135 199 IPR003690 GO:0003690|GO:0006355
Tsu04g04223 377 SMART mt_12 204 232 IPR003690 GO:0003690|GO:0006355
Tsu04g04223 377 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Tsu04g04223 377 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Tsu04g04223 377 Gene3D Transcription termination factor 3, mitochondrial 64 180 IPR038538 -
Tsu04g04223 377 Gene3D Transcription termination factor 3, mitochondrial 181 365 IPR038538 -
Tsu04g04223 377 Pfam mTERF 252 355 IPR003690 GO:0003690|GO:0006355
Tsu04g04223 377 Pfam mTERF 87 236 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04223 Tsu-Chr4 50502610 50503997 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu04g04223 mTERF 9.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04223 K15032 - gmx:102666739 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04223 04 50502610 50503997 Tsu07g01893 07 19099393 19103418 PCT