Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04222 ATGATGCTGAAATTCTTCACCACCACCGCACTTGTTCCCGCCAAGAGCAACATTTTGCTCCTATTCACAACACCATCTTCATCATGCCCTATTTCAAAACATCACTACCcatcaattttcaaattcttcACCACTTCAACCACCACCATCGACCCACAACAATCTTTCACCATCTCTTACCTCATCAACAACTGCGGCTTCACCCCACAATCCGCTTCCAAAGCTTCCCAAAATCTCTCACTCTCCAACTCCCAAAAACCCGATTCAGTTCTCGCTTTCTTCACAACTCATGGTTTCTCTAACTCTCAAATACGAGGCATCATCATAAGGGAACCCTGGTTACTCTCATACAACCCCAACGACGTTTTGTTaccaaagtttcaatttttactCTCTAAAGGTGCTTCTAACTCTGATCTTATTCACATTATTATTGGTAACCCTAAACTTCTTAAAAGAAGTTTACAGAATCATATCATTCCTACTTATCAATTTGCAAAAGAGCTTCTTCaatctgataaaaaaattattgcttGTCTTAAACGTTATGGTTTTCTTTCTCAAGATCATTTGCCTAAGAAAGTTAAATTGTTGCTTGATAATGGAGTTTCTCATTCAAATGTTGCTAGATTGTTTCATTGGTGGCCTAGTATATTTGACTCAGTTGATTTGTTGAATACTGTTGAGGAATTGAAGCAGCTCGGTTTCGATTCTAAAACTTACACTTTTAGCATAGCGTTTCTTGCTAAGAAAACTGTTACCAGTGGGATGAGAAAGTTGAAACCTTTAAGAAATGGGGTTGGTTGGGATTCTTTGGACATCGCTAGAACTCCTGCAATTTTGCAGTTCAGTCTTGAGAAGAGAATTATTCCTAGAGGTTTAGTTGTTCAGTTTCTTATCTCAAAAGGCCTTCGACGAAAGGATGCAAGTATGTATACACCATTTGTTTTATCTGAGAAGTTGTTTGTGGAAAAGTTTGTGAACAGTTTTACGGAGCATTCTTCTGATCTGTTAAAGCTTTATGAGGAAAAAATGAATCTTGCAGATAGCAGGAATGGCCTTCAGATGGATTTTGACATATGTATAAGAACAGTAGCTAAGGTAAACTCTCCTCACATTGTTGATTCTACTAGAAGTTTGTGA 1143 0.3648 MMLKFFTTTALVPAKSNILLLFTTPSSSCPISKHHYPSIFKFFTTSTTTIDPQQSFTISYLINNCGFTPQSASKASQNLSLSNSQKPDSVLAFFTTHGFSNSQIRGIIIREPWLLSYNPNDVLLPKFQFLLSKGASNSDLIHIIIGNPKLLKRSLQNHIIPTYQFAKELLQSDKKIIACLKRYGFLSQDHLPKKVKLLLDNGVSHSNVARLFHWWPSIFDSVDLLNTVEELKQLGFDSKTYTFSIAFLAKKTVTSGMRKLKPLRNGVGWDSLDIARTPAILQFSLEKRIIPRGLVVQFLISKGLRRKDASMYTPFVLSEKLFVEKFVNSFTEHSSDLLKLYEEKMNLADSRNGLQMDFDICIRTVAKVNSPHIVDSTRSL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04222 380 Pfam mTERF 91 238 IPR003690 GO:0003690|GO:0006355
Tsu04g04222 380 Pfam mTERF 187 322 IPR003690 GO:0003690|GO:0006355
Tsu04g04222 380 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 26 254 - -
Tsu04g04222 380 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 265 350 - -
Tsu04g04222 380 Gene3D Transcription termination factor 3, mitochondrial 57 339 IPR038538 -
Tsu04g04222 380 PANTHER CGI-12 PROTEIN-RELATED 26 254 IPR003690 GO:0003690|GO:0006355
Tsu04g04222 380 PANTHER CGI-12 PROTEIN-RELATED 265 350 IPR003690 GO:0003690|GO:0006355
Tsu04g04222 380 SMART mt_12 37 68 IPR003690 GO:0003690|GO:0006355
Tsu04g04222 380 SMART mt_12 271 305 IPR003690 GO:0003690|GO:0006355
Tsu04g04222 380 SMART mt_12 141 172 IPR003690 GO:0003690|GO:0006355
Tsu04g04222 380 SMART mt_12 105 136 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04222 Tsu-Chr4 50498479 50499980 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu04g04222 mTERF 5.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04222 K15032 - gmx:102667698 280.796