Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04221 ATGGTGGATAACAATGTTGGAGGAAGTTGTTCTAATTACAATGAAAATGGTGGCATAATTAAGGAACAAGATAGGTTGTTACCAATAGCAAATGTTGGGAGGATAATGAAGCAAATATTACCTCAAAATGCAAAAATCTCAAAGGAGTCAAAGGAAACAATGCAAGAATGTGTGTCAGagttcataagttttgtgaCAAGTGAAGCATCAGAGAAATGTaggaaagaaagaagaaagactGTTAATGGTGATGATATTTGTTGGGCTTTGGCTACACTTGGTTTTGATGATTATGCTGAACCAATGAGAAGGTATTTGCATAGATATAGAGAATTAGAGGTTGATAGAACACCAAATAATAATGTTCAAGATAGAGGAAATTAA 384 0.3073 MVDNNVGGSCSNYNENGGIIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYRELEVDRTPNNNVQDRGN 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04221 127 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 124 - -
Tsu04g04221 127 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Tsu04g04221 127 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Tsu04g04221 127 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Tsu04g04221 127 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 124 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tsu04g04221 127 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Tsu04g04221 127 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tsu04g04221 127 Gene3D Histone, subunit A 18 127 IPR009072 GO:0046982
Tsu04g04221 127 SUPERFAMILY Histone-fold 23 119 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04221 Tsu-Chr4 50492015 50492398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04221 5 121 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.152 1.77e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu04g04221 CBFD_NFYB_HMF 3.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04221 K08065 - gmx:100794513 211.075