Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04218 ATGAAGGATTACAAGAATGAAGAAATTGATACAAGAGATTTCAAAGCAAGAATGATAGAATTGGTTAAGGGCCATAAACATTTAACCTTGGGAATCAACAAGATGCCAAAGAAATATCAAATCATCATTCATCGAAAACGATTACAAGACGCAAAAGCGTTTATCAATCAAGTAAAACTAGTGTTTAAAGATAACAATGAAAAATATTCTGAGTTTAAACAAGTCATGATTGATTTCCATGATAAAAAAACTGATACATCAAGTGTGGTTAAAATGGGGATTGACCTATTTAAAGGACATCCTGATTTACTTTTGGAATTCAACAGTTTCATGCCACAAGGATATCtattatcaaaacaaatttCCTTAGTTCCATTGTATCATGATCATAAACAAGGTCATCAATTAGTGATAAAAGATGCATTTCTCAATAAACTCAAACTTGTGTTTCAAGATAACATGGAAATATATTTCCAGTTTTTACAAGTCATCAATGATCATAAGGCTCAAGGAATTGACATAAGAGGTGTAGTGGCAATAGTGAAAGAGCTGTTCAAAGGGCatagaaatttaattttggGATTCAATGCCTTCTTGCCAAAGGAATATAAAATCAATCTTACATTATTTAAGCTTCATGGTCATAATAAGACTGACAAAGGGAAAAGAGTGAAGAAGGTAGCAGAGAACGATGAACTTCCTTGGGATGTCCTTGATATAATTTCGAAAACTCTGGATATCGACGACCACTTCGAATTTGCTTGTGTGTGCAAGAATTGGAGGGCATTTCATAAAATGTATTGGAGATTGGCATTCCAAGAACCACTAGTTGTTCACAAGTCTTCCTATGTTGAGAAATTTTATTCCTTTATCAGCATATCTAACCAAAAAGATTATCAATCAAATATGATCAATTGTTACGGGCACTTTGCTTATTCTGGATCTTCCAGTGGATATTTGATCATGACAGGGAACAATAATTCATTTATGCTAATCAATCCATTTACGAGAAGAAAGAAGGTAATCAATACCTCAACCTTTAAagtaaaattttcttattttgccTACCATGTCTTACTTGCTTTTCGAAAAGGTTCCGAGGAATTTGTTTTACTGGCTTTATGTAAAAGTTCCAACAGTTTGTATGTCTATCAATCTCGAAATGTTGATTGGGTTACTTGTTCAGAACTGGGATATCCATGGAAGATTGTTGACTTCGTTGTTTTGCATAACACTATATATGTTGTCACTGACAAAGGCAACATAGGGGTACTCAATTTAAATTCTGTAAATATAGAATTTCTAGAAATGCAGACTATTCCCAGTTTAACTTCTTCATCACGCCTAAGGTTGGTTAGTTGTGATGGACAACTTTTTGTGGTTCATGCTAAGCCCAAGGTAGTGTTCAATGTGTACAAGGTTGACTTTTCAACTATGAATTATGTCAAATTGGAAAATTTAGGTGACATTGCATTATTTTATGCTCCCGGGGGAAACTACTATGCATTAAGTAACCCAAACATACGGGGTTATGAAAGCAACTCAGTGTATGTCATCAATGATTTAACTGCAAGATGCACAGTGTATTTAGGGGATGATCACAAACTGCCAGAATACATTGATTATGACGATGACAGAATTCAAGCTCCTCCTCCTCCTAATGAAAGACCCTCCTTGTTGGACTGGTATTTTATACATCTACACTACGAGGTAGACTATGATCTCTAG 1728 0.338 MKDYKNEEIDTRDFKARMIELVKGHKHLTLGINKMPKKYQIIIHRKRLQDAKAFINQVKLVFKDNNEKYSEFKQVMIDFHDKKTDTSSVVKMGIDLFKGHPDLLLEFNSFMPQGYLLSKQISLVPLYHDHKQGHQLVIKDAFLNKLKLVFQDNMEIYFQFLQVINDHKAQGIDIRGVVAIVKELFKGHRNLILGFNAFLPKEYKINLTLFKLHGHNKTDKGKRVKKVAENDELPWDVLDIISKTLDIDDHFEFACVCKNWRAFHKMYWRLAFQEPLVVHKSSYVEKFYSFISISNQKDYQSNMINCYGHFAYSGSSSGYLIMTGNNNSFMLINPFTRRKKVINTSTFKVKFSYFAYHVLLAFRKGSEEFVLLALCKSSNSLYVYQSRNVDWVTCSELGYPWKIVDFVVLHNTIYVVTDKGNIGVLNLNSVNIEFLEMQTIPSLTSSSRLRLVSCDGQLFVVHAKPKVVFNVYKVDFSTMNYVKLENLGDIALFYAPGGNYYALSNPNIRGYESNSVYVINDLTARCTVYLGDDHKLPEYIDYDDDRIQAPPPPNERPSLLDWYFIHLHYEVDYDL 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04218 575 Pfam Paired amphipathic helix repeat 67 110 IPR003822 GO:0006355
Tsu04g04218 575 Pfam Paired amphipathic helix repeat 155 199 IPR003822 GO:0006355
Tsu04g04218 575 ProSiteProfiles PAH domain profile. 44 114 IPR003822 GO:0006355
Tsu04g04218 575 SUPERFAMILY F-box domain 231 279 IPR036047 GO:0005515
Tsu04g04218 575 SUPERFAMILY PAH2 domain 45 114 IPR036600 GO:0006355
Tsu04g04218 575 ProSiteProfiles PAH domain profile. 124 202 IPR003822 GO:0006355
Tsu04g04218 575 Pfam F-box domain 232 262 IPR001810 GO:0005515
Tsu04g04218 575 SUPERFAMILY PAH2 domain 141 201 IPR036600 GO:0006355
Tsu04g04218 575 PANTHER OS06G0113600 PROTEIN 229 572 - -
Tsu04g04218 575 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 315 527 IPR011044 -
Tsu04g04218 575 PANTHER OS06G0113600 PROTEIN 229 572 - -
Tsu04g04218 575 Gene3D Paired amphipathic helix 50 112 IPR036600 GO:0006355
Tsu04g04218 575 Gene3D Paired amphipathic helix 141 200 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04218 Tsu-Chr4 50438644 50440499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04218 121 207 WRKY Transcription Factor Family AT4G12020 46.667 1.81e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu04g04218 PAH 6.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04218 - - cam:101488742 645.966