Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04214 ATGGGCCCTACAAGGAAATCTAGAAGTGTAAATAAGAGGTTCTCTAATATTCGTGAGGCCACACCTAGTAAAGATAAAGATGCAGCAAATACCAGCAAGAATCGGCAGAAGGCTAGTCCTGGTATTCAAAAGAAGAGAAAATTGGCCGACATGTTAGGATCACAATGGAGTAAGGAGGAGCTTGAACGTTTCTATGAAGCTTACCGTGAATATGGGAAAGATTGGAAGAAGGTTGCTCATGCAGTACGTAATAGGAACACGGAAATGGTAGAAGCTCTGTACACTATGAACAGGGCATACTTATCTCTTCCAGAGGGAACTGCTTCTGTTGTTGGACTGATAGCAATGATGACAGATCATTATAGTATACTGGGAGGAAGTGACAGTGGAAAAGAAAGCAATGAAGACACAGAAGTACGTAAAAAGTCTAAAAAACGTCCACGGGGAAAGACAAATGACAATAAAGTAGTAGATGGACACTTTTCAGATCATTCTCAGCCACAATCAGTTGCATCAGACGATGGTTGCCTGTCATTGTTGAAGAATAGGCATTCTGGAATTAGGCCTCATGCCGTTCGAAAAAGGACTCCTCGTGTCCCTATTTCATATTCTATTGGCAAAGATAATGGGGGAAAGTTTTTTTCATCTGCTAGGCAGGACTCCAAACAAATGGTTGATACAAATGATGTCACTCATAAAATTGCATTAGCTTTGGCAGAGGcttcacaaagaggtggttcttcaaaaaaaattggatcaCCAAACAAGAAAAACATGCCATCACCCAAGCTTAAAATTGGGAAGAAGCGTGTTAAACCAGAAATAGTCAGAGCCAAGTTCGGCAACACTGACATGGACGAGGGTAGTTCTGAGTTGAGTTTAGGAAGCACAGAAGGTGATAATGGAGGTTATTCTAGAAAATTAATTCATCGGAGCGGTAGAGAAAATACTGGTAGAGGAAAGAATCGGGAAAAGGGAATAAAACGCTACAGAAAGAATTTAGAACCCGGGGAAAATATAAACAAGCATTTGAATGACATAAAGGAGGCTTCCAGTGGGACCGATGATGGCAAAAACCATAGTTCCTTCAAGTCCAATTTTGACACAGATTTTGCAAATGCAAAAAGTGTGAGGTCTTCTCACAAGGGTCCCggaaagaaaagtaaaaaactaCTTTTTGAGAAAGATGAAGGTTCAGCTTTCGATGCTCTGAAAACTTTGGCTGATCTATCTTTGATGATGCCAGAAACAAACCCTGACACTGAATCATCTGTGCAGTTCAACGAAGGAAACCATGATGTGGTTGACGAGTCTAAAATGGAAACAGATAATGGAAACAGTTCGAGAAAATGGGGCAAGGTTTTTTCTGATAAAGGAGCTGCTGCTCCCAAAGCAGAGGTAGCGTACCAGATTAATGCAGGAAGCaggaaaagaaaacaaaaatcgCTTACCTTAAAAAATGATGAAACACATACTGGTTCTCATTTAAGTGGCTCCCCGAAAATCAAgGTTACTGATGAGGTGAAGTCCATGGTTAAAGGCAAGCGATCATCTGTCAGTACAGCTCATTCTAGACAAATTAAAATGGAGAGAGCCCTAGGAAAAATTTCGCCTTCGAATATTATTGACAAAGCAAGAAAGGATGGTTCATATGTTTCCCCCATAAAAGTTTTGTCTACTAACAAAGTCGGTCAAGTAAACAGAGACCGACCTAGAAGAAAGATggaaaaaccaaaaccaatgGTACAAAAAGATCATACAGTGTCTGAAAAATCCGTTGCTTCATACTGGTGGAATAGTATTGAACATCACAAGGGAAAGCTTATTAATTGTTTGTCTTCATATCAAATGCGGCGATGGTGCACCTCTGAATGGTTTTATAGTGCTATTGATTATCCATGGTTTTCAAAGAGAGAGTTTGTAGAATACTTAGACCATGTTGGACTGGGTCATGTTCCCAGATTGACTCGTATTGAATGGGGAGTCATTCGAAgTTCTCTTGGTAGACCACGAAGATTTTCAGAGCAAtttttgattgaagaaaaacaTAAACTTAATCAGTACCGAGAGTCTGTCAGATCACATTATGCTGAAGTCCTTGCTGGTACCAAGGAAGGGCTACCTGCTGATTTGGCCCAGCCATTAATTGTTGGGCAGCGTGTTATTGCTATTCATCCGAAGACAAGGGAAATTCATGATGGAAGCATACTGACCGTTGACCATTGTAGATACCGGGTTCAGTTTGACCAGCATGAACTTGGGGTTGAATTTGTCATGGATATTGACTGCATGCCTTTGTATCCATCTGAGAATATGCCCATGTCTCTGATAAGACACCATATCACTCCTAGAATAAATGACAACCTTCGTGAGCTTACGCGTAATGGGAAACTAGCACAAAGAAAGATCTCTGAGCACACAATATTGTCCCCAAGTGACAACTCAGATGCCATAAAAGGTCGTTGTGTACCACCCACTATGCATGGGTTTTCTTCACGCTGCAAATCACAAGCAAAAGCTGCAGGCAGTGAGATTTGTAATGGCCAATCAGCATCAAGTTCCCAGTCTTCCTTTCTTGAAAGAGTCCATTCAAAAGAAGCTGATATATTAGCTATTTTAGAATTGAATCGTGCTCTAGAAAAGAAGGACCTTGTGTTGTCTGAACTGAAGCAAATGAATGACGGGGTATCAGAAAGCCAGAAATACAGAGACAACTCGGTGAAAGATTCGGAACCTTTTAAAAGGAATTATGCTTCAGTATTAAAGCAATTATCTGAAGCAAATGAACAGGTTTCTTCTCGCTTGTTTTGCTTGAGGCAACGCAATGCATATCAAGCAAGCTCCTCTGTTTTGTCATTGAAGCCCATGCCAAATTTTGATGATCCTGGTGGTCAGGCTAGTTCTTCCAATTGTTCAGCTTGCCACAACCAAGAATCTATATCTCAAAGTCATATAGCTGAAATTGTTGAAAGTTCTAGAAGAAAAGCTCGAACCATGGTTGTTCAAGCTGCTCAGGCAATGTCAGTTTTTAGAAAGACAGAAAAGGTTGAAAGAATTGAGgatgcaataaattttataaataaccGGATTTCGGTCGATGACTCTACTGCTTCAGCCACAAATTTTCTCCCCCTAGATTCTATTACTTTGGCTTCTCGGGATCAATTGGCTGCTAGCAGCACGTTGAACATTTTGGCAAGGTGTCATGTACAAGATGATGAACTTAACTGTTCATCTGaccaaaatgaaatgaaaatccCCTCAGAACTCATATCTCATTGTCTAGCTACACTGCTCATGATTCAGAAGTGTACGGAACGACAATTTCCCCCAGCTGATGTTGCTCAGGTATTAGATTCTGCCGTCACCAGTTTGCAGCCATTTTGTTCAAAGAATCTTCCAATATATGGTGAGATACAGAAATGCATGGGTATCATAAGAAATCAGATACTGGCACTTGTACCTACCTAG 3471 0.391 MGPTRKSRSVNKRFSNIREATPSKDKDAANTSKNRQKASPGIQKKRKLADMLGSQWSKEELERFYEAYREYGKDWKKVAHAVRNRNTEMVEALYTMNRAYLSLPEGTASVVGLIAMMTDHYSILGGSDSGKESNEDTEVRKKSKKRPRGKTNDNKVVDGHFSDHSQPQSVASDDGCLSLLKNRHSGIRPHAVRKRTPRVPISYSIGKDNGGKFFSSARQDSKQMVDTNDVTHKIALALAEASQRGGSSKKIGSPNKKNMPSPKLKIGKKRVKPEIVRAKFGNTDMDEGSSELSLGSTEGDNGGYSRKLIHRSGRENTGRGKNREKGIKRYRKNLEPGENINKHLNDIKEASSGTDDGKNHSSFKSNFDTDFANAKSVRSSHKGPGKKSKKLLFEKDEGSAFDALKTLADLSLMMPETNPDTESSVQFNEGNHDVVDESKMETDNGNSSRKWGKVFSDKGAAAPKAEVAYQINAGSRKRKQKSLTLKNDETHTGSHLSGSPKIKVTDEVKSMVKGKRSSVSTAHSRQIKMERALGKISPSNIIDKARKDGSYVSPIKVLSTNKVGQVNRDRPRRKMEKPKPMVQKDHTVSEKSVASYWWNSIEHHKGKLINCLSSYQMRRWCTSEWFYSAIDYPWFSKREFVEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLIEEKHKLNQYRESVRSHYAEVLAGTKEGLPADLAQPLIVGQRVIAIHPKTREIHDGSILTVDHCRYRVQFDQHELGVEFVMDIDCMPLYPSENMPMSLIRHHITPRINDNLRELTRNGKLAQRKISEHTILSPSDNSDAIKGRCVPPTMHGFSSRCKSQAKAAGSEICNGQSASSSQSSFLERVHSKEADILAILELNRALEKKDLVLSELKQMNDGVSESQKYRDNSVKDSEPFKRNYASVLKQLSEANEQVSSRLFCLRQRNAYQASSSVLSLKPMPNFDDPGGQASSSNCSACHNQESISQSHIAEIVESSRRKARTMVVQAAQAMSVFRKTEKVERIEDAINFINNRISVDDSTASATNFLPLDSITLASRDQLAASSTLNILARCHVQDDELNCSSDQNEMKIPSELISHCLATLLMIQKCTERQFPPADVAQVLDSAVTSLQPFCSKNLPIYGEIQKCMGIIRNQILALVPT 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04214 1156 MobiDBLite consensus disorder prediction 286 300 - -
Tsu04g04214 1156 PANTHER LIN-9 1 1156 IPR010561 GO:0006351|GO:0017053
Tsu04g04214 1156 MobiDBLite consensus disorder prediction 124 172 - -
Tsu04g04214 1156 MobiDBLite consensus disorder prediction 304 326 - -
Tsu04g04214 1156 Pfam DIRP 625 726 IPR033471 -
Tsu04g04214 1156 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Tsu04g04214 1156 MobiDBLite consensus disorder prediction 241 264 - -
Tsu04g04214 1156 SMART sant 52 100 IPR001005 -
Tsu04g04214 1156 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1156 IPR028306 -
Tsu04g04214 1156 MobiDBLite consensus disorder prediction 283 326 - -
Tsu04g04214 1156 CDD SANT 56 90 IPR001005 -
Tsu04g04214 1156 MobiDBLite consensus disorder prediction 1 46 - -
Tsu04g04214 1156 Gene3D - 3 108 - -
Tsu04g04214 1156 MobiDBLite consensus disorder prediction 472 500 - -
Tsu04g04214 1156 MobiDBLite consensus disorder prediction 566 585 - -
Tsu04g04214 1156 MobiDBLite consensus disorder prediction 563 585 - -
Tsu04g04214 1156 SMART DIRP_2 626 727 IPR033471 -
Tsu04g04214 1156 SUPERFAMILY Homeodomain-like 51 99 IPR009057 -
Tsu04g04214 1156 Pfam Myb-like DNA-binding domain 54 90 IPR001005 -
Tsu04g04214 1156 MobiDBLite consensus disorder prediction 1 17 - -
Tsu04g04214 1156 MobiDBLite consensus disorder prediction 18 32 - -
Tsu04g04214 1156 ProSiteProfiles Myb-like domain profile. 54 94 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04214 Tsu-Chr4 50396940 50415628 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu04g04214 DIRP 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04214 - - gmx:100811517 1703.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04214 04 50396940 50415628 Tsu04g04214 04 50396940 50415628 ECH