Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04209 ATGGAACGGTACGGCCGAGCAAACGAAGGGTCTAACTCTGATCCGACGCCGGAATGGACTGTCACCGGTGGAGATACATCTCATCAAGGATATGGATTGATTGGTGGTGAATCGTATCCTCAAAGACCAGATGAAGCTGATTGTATCTATTATTTGAGGACAGGTTTTTGCGGTTATGGTTCGAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGcgGTTATTGGAGCTGCGAGGATTGCAGGGGAATATCCGGAAAGAGTTGGACAGCCGGTTTGCCAGTATTATATAAGGACTGGATCGTGCAAATTTGGTGCATCCTGCAAGTATCACCATCCTAGACAGGCAGCTGGCACTACTGCCGCTGTGTCGCTAAATTATTATGGATATCCATTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGCGAAAACCGGACAGTGCAAGTTTGGTGCAACTTGTAAATTCAATCATCCCCAGCCTGCAGGTGTCCCAATGATAGCACCATCACCAGTTCCCCAAGTTTCACCTATGCCAATGCCGGTACCTTCACCAATGTATCAAACTGTACAGCCTCCATCCGGTCCTTCGCAACAACAGTATGGTGTACTTGTTGCAAGGCCACCTTTGCTGCATGGCTCATTTGTCCAGGGTCCCTATGGGCCTATGGTAGTGTCCCCCACCATGGTCCCCTTTTCAGGCTGGAGTCCTTATCAGGCTCAAGCAGCAAGTCCTGTACTTCCTTCTAGTACTCCGTTGAGTGTTGGTCCAACACAAATTTATGGGATGACCCAACTACCTTCACCAACTACTGCCTACACCGGTCATTTTCAATCTTCTGGTTCCTCAACCGGTCCTTCAGGCAGTAGTCAGAAGGAAAACTCATTACCTGAAAGACCTGATCAGCAGGAGTGTCATCATTTCATGAAAACAGGGGAGTGTAAATTTGGTTCTTCGTGTAGATATCATCATCCGCGGGACATGAGTGCACCAAAAGTGAACTTTAGTCCCATTGGTCTTCCTTTGCGCCCGGGGGCACAACCTTGCACTCATTATACACAGCGCGGAATCTGTAAGTTTGGATCTGCATGCAAATTTGATCATCCTATGGGATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTAGCTGATATGCCAGTCGCACCCTATCCTGTGGGTTCCTCCATCGGTACTCTTGCTCCATCATCGTCATCATCCGAGTTGAGGCCTGAACTTGCCTCAGGATCTAGCAAGGAGTCCGCTTCATCCAGAATGTCTTCATCAATGAGCACATCGACTGCATCAGTTGGCGTGACTTTGTCAACTGTTGCACCAGTTTCTCAATCAAGTACTCAGCCATCTGCTCCGAGTTCCAGTTCTTTAGCAACTTCCGGTGCCACCACAAGTAGCACTGTCTCTCACGCCTCAAGCTAA 1434 0.4868 MERYGRANEGSNSDPTPEWTVTGGDTSHQGYGLIGGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPVCQYYIRTGSCKFGASCKYHHPRQAAGTTAAVSLNYYGYPLRVGEKECSYYAKTGQCKFGATCKFNHPQPAGVPMIAPSPVPQVSPMPMPVPSPMYQTVQPPSGPSQQQYGVLVARPPLLHGSFVQGPYGPMVVSPTMVPFSGWSPYQAQAASPVLPSSTPLSVGPTQIYGMTQLPSPTTAYTGHFQSSGSSTGPSGSSQKENSLPERPDQQECHHFMKTGECKFGSSCRYHHPRDMSAPKVNFSPIGLPLRPGAQPCTHYTQRGICKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELASGSSKESASSRMSSSMSTSTASVGVTLSTVAPVSQSSTQPSAPSSSSLATSGATTSSTVSHASS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04209 477 ProSiteProfiles Zinc finger C3H1-type profile. 343 371 IPR000571 GO:0046872
Tsu04g04209 477 ProSiteProfiles Zinc finger C3H1-type profile. 42 70 IPR000571 GO:0046872
Tsu04g04209 477 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Tsu04g04209 477 MobiDBLite consensus disorder prediction 399 477 - -
Tsu04g04209 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 326 IPR000571 GO:0046872
Tsu04g04209 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 69 IPR000571 GO:0046872
Tsu04g04209 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 160 IPR000571 GO:0046872
Tsu04g04209 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872
Tsu04g04209 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 347 370 IPR000571 GO:0046872
Tsu04g04209 477 Gene3D - 116 169 - -
Tsu04g04209 477 MobiDBLite consensus disorder prediction 271 300 - -
Tsu04g04209 477 Gene3D - 37 115 - -
Tsu04g04209 477 SUPERFAMILY CCCH zinc finger 90 115 IPR036855 GO:0046872
Tsu04g04209 477 MobiDBLite consensus disorder prediction 1 38 - -
Tsu04g04209 477 SUPERFAMILY CCCH zinc finger 346 373 IPR036855 GO:0046872
Tsu04g04209 477 SUPERFAMILY CCCH zinc finger 301 327 IPR036855 GO:0046872
Tsu04g04209 477 MobiDBLite consensus disorder prediction 9 27 - -
Tsu04g04209 477 SUPERFAMILY CCCH zinc finger 134 161 IPR036855 GO:0046872
Tsu04g04209 477 Gene3D - 295 381 - -
Tsu04g04209 477 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 467 - -
Tsu04g04209 477 PANTHER PROTEIN PHOSPHATASE RELATED 1 467 - -
Tsu04g04209 477 SUPERFAMILY CCCH zinc finger 44 70 IPR036855 GO:0046872
Tsu04g04209 477 ProSiteProfiles Zinc finger C3H1-type profile. 87 115 IPR000571 GO:0046872
Tsu04g04209 477 SMART c3hfinal6 87 114 IPR000571 GO:0046872
Tsu04g04209 477 SMART c3hfinal6 343 370 IPR000571 GO:0046872
Tsu04g04209 477 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Tsu04g04209 477 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Tsu04g04209 477 SMART c3hfinal6 42 69 IPR000571 GO:0046872
Tsu04g04209 477 MobiDBLite consensus disorder prediction 271 296 - -
Tsu04g04209 477 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04209 Tsu-Chr4 50362497 50366569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04209 1 442 C2H2 Transcription Factor Family AT5G18550 55.991 7.46e-147 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu04g04209 zf-CCCH 1.5e-07 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04209 04 50362497 50366569 Tsu04g04209 04 50362497 50366569 ECH