Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04208 ATGTCAACCTCTAAAAAAACAACATCAGATTCATCTTTCAAAGGATATaatgaaacaaatcaaacacaaatgTGTCTATCATCACTTATCCTTCAAAGGAACACTAACACATTACCTAATGGTgaaaaaagaggaagaagaaaacaaacagaaCCAGGTAGGTTTCTTGGTGTTAGAAGAAGACCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACTAAAGAAAGACATTGGTTAGGTACTTTTGATACTGCTCAAGAAGCTGCTCTTGCTTATGATAGAGCTGCTATTTCCATGAAAGGAAATCAAGCTAGAACAAATTTCATTTACTCTGATACTATCAATTTTCATACACTTGTTTCTTCTCCTTTAGATCTTCAAGTTCAAGTTCAACAAACTCTTTTACCACCTTcacaacaaaacaatcaaaatagTACACTTTTTCAGCTTAACACTCCACACACTACTAGTGGAAATTATCAAAACTCTTCCTCATTGAACAATGACATTAACATGAGTACTTTTGATCATGAAAAAGTTACAAATGAATCATCAACTCATATTCATGatgaaaatttctttttttctaatGATACTAAAAATAACTCTGGCTATCTTGAATGCATAGTTCCTGATAACTGTTTGAGAAACACTTCAAGTGATCAAAAAGTTGGCAACAATGGTGAAAGTAACAAGTTTTTCATGGAGGGTGAATCACATTTTGGTATGGCTTCATTCTGTGAAGAAATGCCAACAAGGGTTTCTAGCTTTCCAGAGTTTTCTTGTTATCCAAGTGAAATTAGTCAAGGTTTCTTGGATTGGAATTCTAATGAACTTTCAGCTATATTTAACAATAATCCATTAAGAGTTGAAGATGAATGCATGGATACATTGTATCCTAATTATCCCATCATTGAAAATCTAAGTCCAAGCTATGTTATGATGAATGACCAATCTACTTCTTCATCACTTGAATTTGGTTACCCTCTCTTTTGA 1002 0.3084 MSTSKKTTSDSSFKGYNETNQTQMCLSSLILQRNTNTLPNGEKRGRRKQTEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAAISMKGNQARTNFIYSDTINFHTLVSSPLDLQVQVQQTLLPPSQQNNQNSTLFQLNTPHTTSGNYQNSSSLNNDINMSTFDHEKVTNESSTHIHDENFFFSNDTKNNSGYLECIVPDNCLRNTSSDQKVGNNGESNKFFMEGESHFGMASFCEEMPTRVSSFPEFSCYPSEISQGFLDWNSNELSAIFNNNPLRVEDECMDTLYPNYPIIENLSPSYVMMNDQSTSSSLEFGYPLF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04208 333 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Tsu04g04208 333 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Tsu04g04208 333 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677
Tsu04g04208 333 Pfam AP2 domain 57 103 IPR001471 GO:0003700|GO:0006355
Tsu04g04208 333 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF086 1 325 - -
Tsu04g04208 333 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Tsu04g04208 333 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Tsu04g04208 333 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Tsu04g04208 333 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 325 - -
Tsu04g04208 333 MobiDBLite consensus disorder prediction 139 165 - -
Tsu04g04208 333 CDD AP2 54 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04208 Tsu-Chr4 50359360 50360361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04208 1 240 AP2-EREBP Transcription Factor Family AT5G18560 42.373 2.59e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu04g04208 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04208 - - cam:101500468 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04208 04 50359360 50360361 Tsu08g03741 08 55648508 55649380 PCT