Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04199 ATGGGTTGTTTTCCTTGTTTTGTATCTTTCAACAAAGAAGATTCCCATGTTCACCCTAGAAGGGTTACCTCAGaAAGATTTCAATTACTGGGTGCCTCAAGTCCTAACACGAAAGATGAGTCGGAAGGAAGTGTGCGTACACATACATTTACATTACAAGAGCTTACAACAGCTACCAATAATTTTTCGCCGGAATATTTAATAGGTGAAGGGGGTTTTGGCCCTGTATACAAAGGTCACCTTGAGAATCATAAAAACGTAGTTGCTGTGAAACAGCTTAAGCAAAAAAGTTGTCAAGGTGATCGAGAATTTTTGGCGGAGGTTCTCATGCTCAACCTATTAAATCACAAAAATCTTGTGAAATTGCTTGGTTATTGTGCTGATGGAGATCAACGGCTACTTGTTTACGAGTATATGGCATTGGGGTCTTTAGACATGCATTTACATGATCTTCCTCCTCGCGCAAAGCCACTAGATTGGAATACAAGGATGAAAATAGCATTGGTAACAGCAAAGGGATTGAAGTATATGCATGAGGCAACTCCCCCTGTAATTTATAGAGACTTAAAATCATCCAACATTCTCCTAGATGAAAATTATCAAGCCAAGTTATCAGATTTTGGGTTGGCGAAACTTGGACCAATTGGTGATATGAGTCATGTAACTACTAGAGTAATGGGAACATATGGTTATTGTGCCCCTGAATATTTTATGACTGGACAACTAACTATGAAGTCTGATGTCTATAGTTACGGAGTACTCCTACTCGAACTTATCTCAGGACGTAGAGCTATCGATGAAAAACGTCCACAACCAGAGCGAAGTTTAGTTGTTTGGGCAAAAGCTCATTTTAATAACCGTAGGAACTTTATCAAATTGGTTGACCCTCAACTTCAAGGTCGTTTTCCAATGGAAGGACTTTATCAAGCAGTTGCAATTGCAGCAATGTGTGTGCATACACAAGCTTCAGCAAGACCTCTAATTAGTGATATTGTGGATAGTCTTACATACATGACCAGAAGAGACACATCACCCcaattgagaaaaagtttgatgaCTAAGTGA 1065 0.3869 MGCFPCFVSFNKEDSHVHPRRVTSERFQLLGASSPNTKDESEGSVRTHTFTLQELTTATNNFSPEYLIGEGGFGPVYKGHLENHKNVVAVKQLKQKSCQGDREFLAEVLMLNLLNHKNLVKLLGYCADGDQRLLVYEYMALGSLDMHLHDLPPRAKPLDWNTRMKIALVTAKGLKYMHEATPPVIYRDLKSSNILLDENYQAKLSDFGLAKLGPIGDMSHVTTRVMGTYGYCAPEYFMTGQLTMKSDVYSYGVLLLELISGRRAIDEKRPQPERSLVVWAKAHFNNRRNFIKLVDPQLQGRFPMEGLYQAVAIAAMCVHTQASARPLISDIVDSLTYMTRRDTSPQLRKSLMTK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04199 354 SMART serkin_6 62 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04199 354 Pfam Protein kinase domain 66 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04199 354 CDD STKc_IRAK 68 336 - -
Tsu04g04199 354 ProSiteProfiles Protein kinase domain profile. 62 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04199 354 PANTHER OS07G0668900 PROTEIN 33 349 - -
Tsu04g04199 354 PANTHER OS07G0668900 PROTEIN 33 349 - -
Tsu04g04199 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Tsu04g04199 354 Gene3D Phosphorylase Kinase; domain 1 33 138 - -
Tsu04g04199 354 SUPERFAMILY Protein kinase-like (PK-like) 45 334 IPR011009 -
Tsu04g04199 354 PIRSF ILK 13 350 - -
Tsu04g04199 354 Gene3D Transferase(Phosphotransferase) domain 1 139 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04199 Tsu-Chr4 50294013 50295951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04199 1 338 Glycoside Hydrolase AT3G07070 55.337 1.10e-136 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Tsu04g04199 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04199 - K13430 csv:101219880 432.95