Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04198 ATGAGGGATTACCAACTTGCGGGGCTAAATTGGCTGATACGTTTGTATGAAAATGGAATAAATGGAATTTTAGCAGATGAAATGGGTCTTGGCAAAACTTTACAAACTATATCTTTGTTGGGCTATTTACATGAGTTCAGAGGAATAACAGGTCCACATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTCTGTCCTACTTTAAGGGCAATTAAGTTCCTTGGTAGCCCTGACGAAAGGAAACATATAAGAGAGGACTTATTGGTTGCTGGAAAGTTTGATGTGTGTGTGACAAGTTTTGAAATGGTAATCAAGGAGAAGACTACATTGCGTCGATTTAGTTGGCGTTATGTTATTATTGATGAAGCCCATCGGATCAAGAATGAGAACTCCCTCCTGTCCAAAACAATGAGGCTATATAATACAAACTACCGACTCCTTATAACCGGCACACCGCTACAGAATAATCTTCACGAGCTCTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCCGGTGAAAATGACCAACAGGAGGTTGTTCAACAACTTCACAAGGTCCTCCGTCCATTTCTTCTTCGAAGATTGAAATCAGATGTGGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCCCAAATGCAGAAACAATATTATAAGGCATTACTGCAGAAGGATCTTGAGGTTGTGAATGCTGGTGGAGAACGGAAACGTCTGCTAAATATAGCAATGCAACTTCGTAAATGTTGCAATCACCCATATCTTTTTCAAGGGGCTGAACCTGGTCCCCCCTACACAACAGGAGACCATCTCGTTACAAATGCTGgCAAAATGGTTCTAATGGATAAATTACTTCCCAAACTTAAAGAGCGGGATTCTAGGGTCCTAATATTTTCACAGATGACTAGACTGCTAGACATACTTGAAGATTATTTGATGTTTCGTGGATACCAATATTGTCGCATAGATGGTAATACTGGTGGAGATGACCGTGATGCGTCCATTGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGAGCTGGAGGTCTCGGCATCAATCTTGCTACTGCCGATGTTGTTATTCTTTATGATAGTGACTGGAACCCACAAGCTGACTTGCAAGCTCAAGATCGAGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCAGATTCTGCACTGAGTATACGATCGAGGAAAAGGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTAGCTGAGCAGAAGTCTGTTAATAAAGATGATTTGCTTCAAATGGTTAGATTCGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAAGATATTGACAGAATTATTGCCAAAGGAGAGGAATCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGATTTGCTTGACTTTGATGATGAGAAAGATGAGAACAAAGttgatttcaaaaaaattgtgagtgACAACTGGGTTGAGCCATCAAGAAGAGAACGGAAGCGAAATTACTCAGAGTCTGAATACTTCAAACAAACAATGCGCCAAGCTGCTCCTACTAAACCAAAAGAACCCCGAATTCCTAGGATGCCTCAATTGCATGATTTTCAGTTCTTCAACACACACAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGATATCTAATGCAAGCACATCAGAAGAATCAGGTAAAAGATTCCATAGATGTTGATGAACCAGAAGAGGTGGGAGAGCAATTGACTGCGGAAGAGTCTGAAGAAAAGGAGCAACTGCTAGAGGAGGGATTCTCATCATGGAGCCGGAAGGATTTTAATACTTTCATTAGGGCATGTGAAAAATATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAGACAGAAGAAGAAGTAGAAAGATATGCAGAAGTTTTCAAAGAGCGATACAAGGAGTTGAATGATTATGATagaattataaaaaacattgaaaGAGGTGAGTCAAGAATAGCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGATACAATATGGACAAAACAAAGGGAAATTATACAATGAAGAATGTGATCGATTCATGATATGCATGACTCACAAACTTGGCTATGGGAATTGGGATGAACTGAAGGCAGCATTTCGAATGTCGCCCTTGTTTCGTTTTGATTGGTTTGTTAAGTCACGCACTACTCAGGAACTAACAAGGAGATGTGACACCCTCATTCGGCTGGTAGAGAAGGAAAATCAAGAATATGATGAAAGGGAGAGACAAGCTCGTAAAGAAAAGAAACTTGCCGCTAAGAGTTCTACTCCATCAAAGCGCCCCATGCCAAGACAGGCAGAGAGTCCATCTCTGAAGAAGCGGAAGCAATTAACGATGGATCAGTATGTAAGCTCGgggaagagaaaaaaataa 2631 0.3976 MRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPTLRAIKFLGSPDERKHIREDLLVAGKFDVCVTSFEMVIKEKTTLRRFSWRYVIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLMDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKSVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEESTAELDAKMKKFTEDAIKFKMDDTADLLDFDDEKDENKVDFKKIVSDNWVEPSRRERKRNYSESEYFKQTMRQAAPTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEEVGEQLTAEESEEKEQLLEEGFSSWSRKDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAEVFKERYKELNDYDRIIKNIERGESRIARKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMTHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAAKSSTPSKRPMPRQAESPSLKKRKQLTMDQYVSSGKRKK 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04198 876 Pfam SLIDE 709 819 IPR015195 GO:0003677|GO:0005634|GO:0006338
Tsu04g04198 876 CDD DEXHc_SMARCA1_SMARCA5 1 218 IPR044754 GO:0005524
Tsu04g04198 876 MobiDBLite consensus disorder prediction 822 876 - -
Tsu04g04198 876 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 306 457 IPR001650 -
Tsu04g04198 876 Coils Coil 802 836 - -
Tsu04g04198 876 Gene3D iswi atpase 707 739 - -
Tsu04g04198 876 ProSiteProfiles SANT domain profile. 651 703 IPR017884 -
Tsu04g04198 876 CDD SF2_C_SNF 302 427 - -
Tsu04g04198 876 Gene3D - 653 706 - -
Tsu04g04198 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 13 178 IPR014001 -
Tsu04g04198 876 SMART helicmild6 332 416 IPR001650 -
Tsu04g04198 876 SUPERFAMILY Homeodomain-like 707 829 IPR009057 -
Tsu04g04198 876 Gene3D - 740 844 - -
Tsu04g04198 876 PANTHER SNF2/RAD54 HELICASE FAMILY 1 876 - -
Tsu04g04198 876 MobiDBLite consensus disorder prediction 822 840 - -
Tsu04g04198 876 Pfam SNF2-related domain 14 281 IPR000330 GO:0005524|GO:0140658
Tsu04g04198 876 Pfam Helicase conserved C-terminal domain 306 416 IPR001650 -
Tsu04g04198 876 Gene3D ISWI, HAND domain 553 652 IPR036306 GO:0003677|GO:0006338|GO:0031491
Tsu04g04198 876 Gene3D - 222 514 IPR027417 -
Tsu04g04198 876 SMART ultradead3 1 189 IPR014001 -
Tsu04g04198 876 CDD SANT 655 699 IPR001005 -
Tsu04g04198 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 216 IPR027417 -
Tsu04g04198 876 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 1 876 - -
Tsu04g04198 876 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 564 654 IPR036306 GO:0003677|GO:0006338|GO:0031491
Tsu04g04198 876 SUPERFAMILY Homeodomain-like 655 705 IPR009057 -
Tsu04g04198 876 Gene3D - 2 217 IPR038718 -
Tsu04g04198 876 SMART sant 652 701 IPR001005 -
Tsu04g04198 876 Pfam HAND 565 647 IPR015194 GO:0003677|GO:0006338|GO:0031491
Tsu04g04198 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 499 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04198 Tsu-Chr4 50285671 50291967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04198 22 443 RAD5 or RAD16-like Gene Family AT1G02670 26.931 1.35e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu04g04198 SNF2_N 6.1e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04198 K11654 - gmx:100791510 1674.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04198 04 50285671 50291967 Tsu04g04198 04 50285671 50291967 ECH
Tsu04g04198 04 50285671 50291967 Tsu08g03723 08 55390363 55398781 PCT