Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g04192 | ATGGGGTGTGTGTTTGGGAAAGAGGGTTCAGATAGGAAGAAGAAAGAGGTGGTGAAAGTTGTTACTAAGGTGGAGGAGGTTGAACTTGAGTGTGAGGTTCAAAATGGTGTGAATGAGAAAGAGgttgaagaggaagaggatgagaaGAGGAGAAGACAAAGAGCAAGAAGGGAGAGGAGGAGACAATCTTTGAAGCCTAATCCAAGGCTGAGCAATCCACCTAACAATATACATGGTGAGCAGGTGGCTGCAGGGTGGCCTTCTTGGCTTTCCAAGGTTGCTGGTGAAGCCATACATGGATTGACGCCCCGAAGGGCGGACAGTTTTCATAAGCTTGATAAGatTGGACAAGGTACATATAGCAATGTTTATAAAGCTAAGGATACTTTAACTGGGAAAATTGTTGCATTAAAGAAGGTTCGGTTTGACAATTTAGAGCCGGAGAGTGTGAAATTCATGGCCAGGGAAATTTTGATTCTGCGTCGCTTGGATCACCCCAATGTTGTCAAACTAGAAGGTTTAGTGACTTCTAGGATGTCATGTAGTTTGTATCTTGTCTTTCAATACATGGAACATGATTTGGCTGGACTTTCTACAAGCCCTTCAATTAAGTTTACACTGTCTCAGGTTAAATGTTACATGCATCAGCTATTTTCTGGATTGGAACACTGTCACAACCGTAATGTGTTGCATCGTGATATAAAGGGATCAAACCTTCTTGTTGATAATGACGGAATCCTTAGAATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAAACAACCTATGACTAGTAGGGTGGTTACTTTATGGTATCGATCTCCCGAACTTCTTCTTGGAGCCACTCATTATGATGTAGGAGTGGACCTGTGGAGTGCTGGCTGTATCCTTGCTGAATTGTTGGCTGGAAGGCCTATTATGCCCGGCCGAACAGAGGTGGAACAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAAGCAAAGCTACCACATGGTACAATTTTTAAGCCGCAACAATCCTATAAGCGATGCATATCAGATAAATTTGAAGATTTCCCACCATCATCGTTGCCACTAATTGAAACCCTTCTAGCAATCGATCCAGATGAACGTCAAACAGCCACTGCTGCATTGCACAGTGAATTCTTTATGACACAACCTTATGCTTGTGAACCCTATAACCTTCCAAAATATCCTCCCAGTAAGGAGATGGATACAAAACTTCGGGATGAAGAAGCTAGAAGATTAAGAGCTGCGGGCAAAGGTAATGCTGTTGGCACGAAGAAATCACGTTCACGTGATCGAAGTGGGAGGGGAATTCCAGTTCCAGAGGTCAATGCTGAGCTGCAAGCAAATATTGATAAATGGAGACTGGTAACACGTGCAAATGCGAAGAGCAAGAGTGAGAAGTTTCCCCCTCCTCACCAAGATGGAACTTTAGGCTATCCTTTGAGTTCGTATCACATGGATCCAGTTTTTGATCCTCCTGACGTTCCATTTAGTTCCATCGATTTCTCATATACTAAAGCAAGTATTCAAACCTGGTCCGGCCCATTGATGGAACCGAGGATGAGTGCACCGAGGAGAAAGAAGAACAAGGCAGGCTTCAAGAAGGACATAAATAGATAG | 1659 | 0.4231 | MGCVFGKEGSDRKKKEVVKVVTKVEEVELECEVQNGVNEKEVEEEEDEKRRRQRARRERRRQSLKPNPRLSNPPNNIHGEQVAAGWPSWLSKVAGEAIHGLTPRRADSFHKLDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFQYMEHDLAGLSTSPSIKFTLSQVKCYMHQLFSGLEHCHNRNVLHRDIKGSNLLVDNDGILRIADFGLASFFDPNHKQPMTSRVVTLWYRSPELLLGATHYDVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEEYWKKAKLPHGTIFKPQQSYKRCISDKFEDFPPSSLPLIETLLAIDPDERQTATAALHSEFFMTQPYACEPYNLPKYPPSKEMDTKLRDEEARRLRAAGKGNAVGTKKSRSRDRSGRGIPVPEVNAELQANIDKWRLVTRANAKSKSEKFPPPHQDGTLGYPLSSYHMDPVFDPPDVPFSSIDFSYTKASIQTWSGPLMEPRMSAPRRKKNKAGFKKDINR | 552 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g04192 | 552 | ProSitePatterns | Protein kinases ATP-binding region signature. | 115 | 138 | IPR017441 | GO:0005524 | |
Tsu04g04192 | 552 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 229 | 241 | IPR008271 | GO:0004672|GO:0006468 | |
Tsu04g04192 | 552 | Pfam | Protein kinase domain | 109 | 393 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Tsu04g04192 | 552 | MobiDBLite | consensus disorder prediction | 528 | 552 | - | - | |
Tsu04g04192 | 552 | SMART | serkin_6 | 109 | 393 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Tsu04g04192 | 552 | Gene3D | Transferase(Phosphotransferase) domain 1 | 192 | 431 | - | - | |
Tsu04g04192 | 552 | MobiDBLite | consensus disorder prediction | 429 | 451 | - | - | |
Tsu04g04192 | 552 | MobiDBLite | consensus disorder prediction | 35 | 53 | - | - | |
Tsu04g04192 | 552 | Gene3D | Phosphorylase Kinase; domain 1 | 97 | 191 | - | - | |
Tsu04g04192 | 552 | ProSiteProfiles | Protein kinase domain profile. | 109 | 393 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Tsu04g04192 | 552 | MobiDBLite | consensus disorder prediction | 35 | 78 | - | - | |
Tsu04g04192 | 552 | PANTHER | OS01G0367700 PROTEIN | 36 | 543 | - | - | |
Tsu04g04192 | 552 | Coils | Coil | 38 | 58 | - | - | |
Tsu04g04192 | 552 | CDD | STKc_CDK9_like | 109 | 393 | - | - | |
Tsu04g04192 | 552 | PANTHER | CELL DIVISION PROTEIN KINASE | 36 | 543 | - | - | |
Tsu04g04192 | 552 | SUPERFAMILY | Protein kinase-like (PK-like) | 103 | 398 | IPR011009 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g04192 | Tsu-Chr4 | 50240653 | 50243580 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g04192 | 104 | 431 | Core Cell Cycle Gene Families | AT5G10270 | 48.837 | 1.13e-109 | 335 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | CMGC_CDK-CRK7-CDK9 | Tsu04g04192 | Pkinase | 1.4e-66 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g04192 | K08819 | - | gmx:100814207 | 851.662 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu04g04192 | 04 | 50240653 | 50243580 | Tsu04g04192 | 04 | 50240653 | 50243580 | ECH | |
Tsu04g04192 | 04 | 50240653 | 50243580 | Tsu08g03711 | 08 | 55254904 | 55259494 | PCT |