Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04192 ATGGGGTGTGTGTTTGGGAAAGAGGGTTCAGATAGGAAGAAGAAAGAGGTGGTGAAAGTTGTTACTAAGGTGGAGGAGGTTGAACTTGAGTGTGAGGTTCAAAATGGTGTGAATGAGAAAGAGgttgaagaggaagaggatgagaaGAGGAGAAGACAAAGAGCAAGAAGGGAGAGGAGGAGACAATCTTTGAAGCCTAATCCAAGGCTGAGCAATCCACCTAACAATATACATGGTGAGCAGGTGGCTGCAGGGTGGCCTTCTTGGCTTTCCAAGGTTGCTGGTGAAGCCATACATGGATTGACGCCCCGAAGGGCGGACAGTTTTCATAAGCTTGATAAGatTGGACAAGGTACATATAGCAATGTTTATAAAGCTAAGGATACTTTAACTGGGAAAATTGTTGCATTAAAGAAGGTTCGGTTTGACAATTTAGAGCCGGAGAGTGTGAAATTCATGGCCAGGGAAATTTTGATTCTGCGTCGCTTGGATCACCCCAATGTTGTCAAACTAGAAGGTTTAGTGACTTCTAGGATGTCATGTAGTTTGTATCTTGTCTTTCAATACATGGAACATGATTTGGCTGGACTTTCTACAAGCCCTTCAATTAAGTTTACACTGTCTCAGGTTAAATGTTACATGCATCAGCTATTTTCTGGATTGGAACACTGTCACAACCGTAATGTGTTGCATCGTGATATAAAGGGATCAAACCTTCTTGTTGATAATGACGGAATCCTTAGAATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAAACAACCTATGACTAGTAGGGTGGTTACTTTATGGTATCGATCTCCCGAACTTCTTCTTGGAGCCACTCATTATGATGTAGGAGTGGACCTGTGGAGTGCTGGCTGTATCCTTGCTGAATTGTTGGCTGGAAGGCCTATTATGCCCGGCCGAACAGAGGTGGAACAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAAGCAAAGCTACCACATGGTACAATTTTTAAGCCGCAACAATCCTATAAGCGATGCATATCAGATAAATTTGAAGATTTCCCACCATCATCGTTGCCACTAATTGAAACCCTTCTAGCAATCGATCCAGATGAACGTCAAACAGCCACTGCTGCATTGCACAGTGAATTCTTTATGACACAACCTTATGCTTGTGAACCCTATAACCTTCCAAAATATCCTCCCAGTAAGGAGATGGATACAAAACTTCGGGATGAAGAAGCTAGAAGATTAAGAGCTGCGGGCAAAGGTAATGCTGTTGGCACGAAGAAATCACGTTCACGTGATCGAAGTGGGAGGGGAATTCCAGTTCCAGAGGTCAATGCTGAGCTGCAAGCAAATATTGATAAATGGAGACTGGTAACACGTGCAAATGCGAAGAGCAAGAGTGAGAAGTTTCCCCCTCCTCACCAAGATGGAACTTTAGGCTATCCTTTGAGTTCGTATCACATGGATCCAGTTTTTGATCCTCCTGACGTTCCATTTAGTTCCATCGATTTCTCATATACTAAAGCAAGTATTCAAACCTGGTCCGGCCCATTGATGGAACCGAGGATGAGTGCACCGAGGAGAAAGAAGAACAAGGCAGGCTTCAAGAAGGACATAAATAGATAG 1659 0.4231 MGCVFGKEGSDRKKKEVVKVVTKVEEVELECEVQNGVNEKEVEEEEDEKRRRQRARRERRRQSLKPNPRLSNPPNNIHGEQVAAGWPSWLSKVAGEAIHGLTPRRADSFHKLDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFQYMEHDLAGLSTSPSIKFTLSQVKCYMHQLFSGLEHCHNRNVLHRDIKGSNLLVDNDGILRIADFGLASFFDPNHKQPMTSRVVTLWYRSPELLLGATHYDVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEEYWKKAKLPHGTIFKPQQSYKRCISDKFEDFPPSSLPLIETLLAIDPDERQTATAALHSEFFMTQPYACEPYNLPKYPPSKEMDTKLRDEEARRLRAAGKGNAVGTKKSRSRDRSGRGIPVPEVNAELQANIDKWRLVTRANAKSKSEKFPPPHQDGTLGYPLSSYHMDPVFDPPDVPFSSIDFSYTKASIQTWSGPLMEPRMSAPRRKKNKAGFKKDINR 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04192 552 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Tsu04g04192 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Tsu04g04192 552 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04192 552 MobiDBLite consensus disorder prediction 528 552 - -
Tsu04g04192 552 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04192 552 Gene3D Transferase(Phosphotransferase) domain 1 192 431 - -
Tsu04g04192 552 MobiDBLite consensus disorder prediction 429 451 - -
Tsu04g04192 552 MobiDBLite consensus disorder prediction 35 53 - -
Tsu04g04192 552 Gene3D Phosphorylase Kinase; domain 1 97 191 - -
Tsu04g04192 552 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04192 552 MobiDBLite consensus disorder prediction 35 78 - -
Tsu04g04192 552 PANTHER OS01G0367700 PROTEIN 36 543 - -
Tsu04g04192 552 Coils Coil 38 58 - -
Tsu04g04192 552 CDD STKc_CDK9_like 109 393 - -
Tsu04g04192 552 PANTHER CELL DIVISION PROTEIN KINASE 36 543 - -
Tsu04g04192 552 SUPERFAMILY Protein kinase-like (PK-like) 103 398 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04192 Tsu-Chr4 50240653 50243580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04192 104 431 Core Cell Cycle Gene Families AT5G10270 48.837 1.13e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu04g04192 Pkinase 1.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04192 K08819 - gmx:100814207 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04192 04 50240653 50243580 Tsu04g04192 04 50240653 50243580 ECH
Tsu04g04192 04 50240653 50243580 Tsu08g03711 08 55254904 55259494 PCT