Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04182 ATGGGAAGGTACCGAAGCCGTAGCAGAAGCTACAGCCCTCGCCGCCGTAGCAGAACTCCACCACCTCGCGGTCGCAAACGTTACGACGATGATCGCTATGCTGACAACAGGTCTCACAGAGACCGTCGTTCTCCTCTTCCTTCTGGATTACTCGTTCGTAATCTCCCCCTTGATGCTAGACCTGAAGATCTTAGGGGACCGTTTGAGCGCTATGGTCCTGTGAAGGATGTTTACCTTCCTAGAAATTATTACACTGGTGAGCCTCGTGGCTTTGGATTTGTGAAATACCGACATGGTGAAGATGCAGCAGAGGCAAAACAACAACTGAATCACTCTATCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAGACACCTCAAGAAATGCGTGTTACTTCTCATGGAAGCGGTCGAAATGGAGGTGGTAGTAGAAGGAGAGCTCGGTCAAGATCCCCACGACGCCGTTATCGATCCTACTCTAGGTCTCCATCACCTGCCAGGGATGATTCAAGATAG 531 0.4934 MGRYRSRSRSYSPRRRSRTPPPRGRKRYDDDRYADNRSHRDRRSPLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEAKQQLNHSIIGGREIRIVFAEENRKTPQEMRVTSHGSGRNGGGSRRRARSRSPRRRYRSYSRSPSPARDDSR 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04182 176 MobiDBLite consensus disorder prediction 23 46 - -
Tsu04g04182 176 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 172 - -
Tsu04g04182 176 MobiDBLite consensus disorder prediction 146 162 - -
Tsu04g04182 176 SUPERFAMILY RNA-binding domain, RBD 50 153 IPR035979 GO:0003676
Tsu04g04182 176 MobiDBLite consensus disorder prediction 1 22 - -
Tsu04g04182 176 MobiDBLite consensus disorder prediction 1 49 - -
Tsu04g04182 176 MobiDBLite consensus disorder prediction 126 176 - -
Tsu04g04182 176 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Tsu04g04182 176 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 120 IPR000504 GO:0003723
Tsu04g04182 176 Gene3D - 23 168 IPR012677 -
Tsu04g04182 176 SMART rrm1_1 49 122 IPR000504 GO:0003723
Tsu04g04182 176 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04182 Tsu-Chr4 50163736 50167942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04182 52 110 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 2.69e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04182 K12900 - gmx:100788749 226.098