Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04167 ATGGGTTGTGTTCATGGCAAGTGTTGCTGTGTGGAAAGTTCTTCATCGGATGGAGGTTTGAGAAAACATGGCTTCCATCATAGCCATAGGAAGAATATACTTGCTCAGAGAGTACTGAAAAATGTTTCTGTTCCTTCCCACAACTTTGTTTTGGAATATACCTTTCTCACGCTGCGAGGATACTATCCGGACTCGTTGGATAAACAAAACCAAGATAATTTTTGCATTAGGACACAAATGCAAGGTAACCCTGATATCCATTTCTTCGGTGTTTTTGATGGGCATGGTCAGTTTGGTAGTCAGTGTTCAAACTTTGTTAGGGATAGGTTGGTTGAAAAATTATCTAATGACCCTACATTGGTGGAGGATCCTGTTCAAGCTTATAATTCTGCTTTCGCGGCAACAAATCATGAGTTGCATACTAGTGACATTGATGATTCTATGAGTGGCACAACGGCAATTACAGTGCTTGTTGTTGGAGACACCCTTTATGTTGCTAATGTTGGTGATTCGAGAGCTGTGATAGCTGTTAAGGATGGTGATCGGATTACTGCAGAGGACTTGTCGTCTGATCAGACACCATTTCGGAGAGATGAATATGAAAGAGTGAAACTTTGTGGAGCAAGGGTGTTGAGTGTTGATCAAGTGGAAGGGATCAAGGATCCAAATATCCAGCATTGGGGTAACGAAGAGAGTTGGGATGGCGATCCTCCAAGATTGTGGCTTCCACATGGGATGTATCCTGGAACTGCATTTACAAGGAGTTTAGGGGATAGGTTGGCGGAGACAATTGGTGTGGTTGCTACTCCAGAGGTGTCAATAAAAAAGCTTACGCCCAATCATCTCTTCTTTGTTGTGGCTAGTGATGGCATATTTGAATTCTTGTCAAGCCAAACTGTTGTTGATATGACTGCGAGATATACAGATCCCCGTGATGCATGTGCTGCTATTACTGAAGAGTCATATAAACTATGGTTGGAACTTGTGAATCGAACAGATGATATAACAATTATCATTGTCCAGATTAAAGGACTTTCTAATTCAAGTACATCTGGAGTTGAATTAAGTGAGGTCAATGCTGGGACTGCAACGAGAACCACGACAGGAACGACTGATATATCTGCTACCACTGAATTTGATGTTTATCATTCTATGACAAACAGTTTCTCTGATTCACAATCCTGCCAGCATGTGGCTTCACTGAGTAGCCCGGGCACAGTTGTTTACTCTCAGTCATCTCAAAGATAA 1248 0.4191 MGCVHGKCCCVESSSSDGGLRKHGFHHSHRKNILAQRVLKNVSVPSHNFVLEYTFLTLRGYYPDSLDKQNQDNFCIRTQMQGNPDIHFFGVFDGHGQFGSQCSNFVRDRLVEKLSNDPTLVEDPVQAYNSAFAATNHELHTSDIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKDGDRITAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGIKDPNIQHWGNEESWDGDPPRLWLPHGMYPGTAFTRSLGDRLAETIGVVATPEVSIKKLTPNHLFFVVASDGIFEFLSSQTVVDMTARYTDPRDACAAITEESYKLWLELVNRTDDITIIIVQIKGLSNSSTSGVELSEVNAGTATRTTTGTTDISATTEFDVYHSMTNSFSDSQSCQHVASLSSPGTVVYSQSSQR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04167 415 CDD PP2Cc 68 342 IPR001932 -
Tsu04g04167 415 SMART PP2C_4 48 340 IPR001932 -
Tsu04g04167 415 Pfam Protein phosphatase 2C 69 320 IPR001932 -
Tsu04g04167 415 SUPERFAMILY PP2C-like 40 344 IPR036457 -
Tsu04g04167 415 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 30 402 - -
Tsu04g04167 415 Gene3D - 51 344 IPR036457 -
Tsu04g04167 415 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 30 402 - -
Tsu04g04167 415 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Tsu04g04167 415 ProSiteProfiles PPM-type phosphatase domain profile. 52 342 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04167 Tsu-Chr4 50062524 50066136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04167 1 347 PP2C-type Phosphatase Gene Family AT3G06270 69.741 7.95e-177 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04167 - - gmx:100797866 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04167 04 50062524 50066136 Tsu04g04167 04 50062524 50066136 ECH
Tsu04g04167 04 50062524 50066136 Tsu08g03669 08 54729222 54732659 PCT