Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04161 atGGCTTCCTCTCCTTCAAACACCACCCCTCCTCCTCCTCTCCCAGATCCACCAACCGCCGTCCCCCTCGCTCTCCCCTCCCCACTCCCACTCCCTCTCCCTACCTCCACCCGCCGTCTCCCTCCACCATGCTGGTCCCCTGACGAAACCCTAGCTCTCATCGACTCTTACCGTGACAAATGGTACTCTCTTGGCCGTGGAAACCTAAAAGCTACTCACTGGCAAGAAGTTGCTGACGCTGTTTCTCAGCGTTGCCCTAACGCTTCTCCGTCTAAAACTCCCGTTCAATGTCGTCACAAGATGGAGAAGCTTCGTAAACGTTATCGAACTGAGATTCAACGTGCTCGCTCGCTTCCTGTCTCTAGATTTAACTCCGCTTGGGTTCACTTTAAGCTTATGGATTCTATGGAGAAAGGTCCTTCTCCTGTTAAATCTGAAAATAACGATACCGATagcgatgatgatgatgaagaagaagatcgAGATCATCAGGATCTATATATGGATTTCAAAAACGGTCATGGATCTAATACTAGAAGCATCAATAAGTTGTACAAAAACGGTTTCAGTGGAAGTGGCGGTGGCAGTGGTGGTAGCGGTGGTGGTGGTAGTGTTGGTGGAGGGTTTAGGATTAGGTATCCACCGGCACAACCTGAACCGAAGTTTTTCCCTGATCAGAAATATAACCCTAATCTGAATCAAAACTATGGGACACCACCAACAGCATCAACGACGAAGGGGATGGGGAACAAGAGGGAGAGAGATCCCTTGGGAGAGGTTGTGTCTGCTATTAAGGTATTGGGTGATGGATTTGTGAGGATGGAGCAAATGAAGATGGAGATGGCGAGGGAGATTGAAGCTATGAGGATGGAGATGGAAATGAAGCGAACTGAGATGATTCTCGAATCTCAACAGCGAATTGTGGAGGCATTTGCAAAAGCCGTTTCCGATGAcagcaacaacaataacaataacaagatGAAGCCTATTAATAAGAGAATTCCCTCACCACAACAACCGTAA 1023 0.4575 MASSPSNTTPPPPLPDPPTAVPLALPSPLPLPLPTSTRRLPPPCWSPDETLALIDSYRDKWYSLGRGNLKATHWQEVADAVSQRCPNASPSKTPVQCRHKMEKLRKRYRTEIQRARSLPVSRFNSAWVHFKLMDSMEKGPSPVKSENNDTDSDDDDEEEDRDHQDLYMDFKNGHGSNTRSINKLYKNGFSGSGGGSGGSGGGGSVGGGFRIRYPPAQPEPKFFPDQKYNPNLNQNYGTPPTASTTKGMGNKRERDPLGEVVSAIKVLGDGFVRMEQMKMEMAREIEAMRMEMEMKRTEMILESQQRIVEAFAKAVSDDSNNNNNNKMKPINKRIPSPQQP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04161 340 Coils Coil 278 298 - -
Tsu04g04161 340 Pfam Myb/SANT-like DNA-binding domain 43 136 IPR044822 -
Tsu04g04161 340 PANTHER TRANSCRIPTION FACTOR 3 325 - -
Tsu04g04161 340 Coils Coil 98 118 - -
Tsu04g04161 340 MobiDBLite consensus disorder prediction 1 42 - -
Tsu04g04161 340 MobiDBLite consensus disorder prediction 231 253 - -
Tsu04g04161 340 MobiDBLite consensus disorder prediction 136 162 - -
Tsu04g04161 340 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 3 325 IPR044823 -
Tsu04g04161 340 MobiDBLite consensus disorder prediction 314 340 - -
Tsu04g04161 340 SMART 118neu2 52 141 IPR006578 -
Tsu04g04161 340 MobiDBLite consensus disorder prediction 231 247 - -
Tsu04g04161 340 ProSiteProfiles Myb-like domain profile. 45 105 IPR001005 -
Tsu04g04161 340 MobiDBLite consensus disorder prediction 191 212 - -
Tsu04g04161 340 MobiDBLite consensus disorder prediction 1 41 - -
Tsu04g04161 340 MobiDBLite consensus disorder prediction 315 340 - -
Tsu04g04161 340 Gene3D - 45 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04161 Tsu-Chr4 50026407 50027872 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04161 44 136 Trihelix Transcription Factor Family AT3G14180 36.559 2.98e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu04g04161 Myb_DNA-bind_4 4.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04161 - - gmx:121175207 368.622