Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04120 ATGCCTCCTGATCAGAGAAAAAAGTCATCTGTAGATGTAGACTTCTTTACAGAATATGGTGAAGGGAGTAGATACATGATAGAGGAAGTAATTGGTAAAGGAAGCTATGGTGTGGTTTGCTCTGCATATGATACGCACACCGGAGAAAAGGTtgcaataaagaaaatcaatGACATATTCGAACATGTTTCTGATGCTACCCGCATTCTTCGTGAGATCAAGCTTCTTAGACTCCTACGTCATCCTGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCTAGAAGGGAATTCAAAgatatatatgttgtttttgAACTTATGGAATCAGATTTACATCAAGTCATCAAAGCAAATGATGACTTGACTCCAGAACATTACCAATTTTTTCTCTATCAGCTTCTTCGGGGTTTGAAGTATATACACACAGCAAATGTTTTTCATCGTGATCTAAAGCCAAAAAACATTTTAGCAAACGCTGACTGCAAACTGAAGATTTGCGATTTTGGTCTTGCCAGAGTAGCTTTCAATGATACACCCACTGCTATATTCTGGACAGATTATATTGCAACAAGGTGGTATAGGGCTCCTGAGTTGTGCGGATCCTTTTTCTCCAAGTATACACCGGCTATAGACATATGGAGCATTGGCTGCATTTTCGCGGAACTTTTAACTGGAAAGCCTCTTTTCCCAGGGAAGAATGTTGTACATCAATTGGACCTCATGACAGATTTCCTTGGAACACCATCTCCTGAAGCCATTGCTAGGATACGAAACGAGAAAGCTCGGAGATACTTGAGCAGCATGCGTAAGAAGAAGCCAGTTCCTTTGTATCAGAAGTTTCCTAATGCAGACCCCCTTGCTCTTCGTGTGTTAGAAAGAATGTTGGCATTTGATCCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCGGATCCATATTTTAACGGCTTGGCAAAGTTCGAAAGAGAGCCTTGTGCTCAGCCAGTTAGCAAAATGGAATTTGAATTCGAGAGACGCAGGGTAACAAAGGAAGACGTGCGAGAGCTTATATACAGAGAGACTCTTGAGTACCATCCAAAGATGTTAAAGGAACATCTAGAAGGGGCAGAGCCAACAGGATTCATGTATCCCAGTGCTGTGGACCACTTCAAGAAGCAATTTGCATACCTTGAGGAGCATTATGGAAAAGGTGGTACTATTAGTCCACTTGATAGGCAACATGCATCATTACCCAGGCAGTGTGTGTTGTATTCTGACGACTCAAGACAGAATATGGCCGAGGTTGCAGCAGATGATCTCTCCAAGTGTTGCATCAACGAAGTTGAGAAGCCAGTCATTGATAGGAATGGTGGTGTTGCTATGAATAGGATGCCTTTACAAGCTCCTCAAAATATTCAAGGTGTGATGACTAATCGAAGTGTTGCCCCACGGCCCAGAAAAGTTGCGGGTTCTGCATTGCATTACAATTGTGGGGTAGCAGGGGCTGAGCAGCGGAGGACGATTAAAAATCCATCTGTTTCAGCTCAGTATGCGGCTTCAAGCTGTTCGTATCCTAAAAGAAATCCAAGCTGTAAAAACGAGAGAGCAGAAGATGGGATTGAAGGTTCTAAGGGACTTCCGTCAAAGCCTCAATACATAGCACGAAAAGTTGCTGCTGCTCCAGGTGGAGCTGGCAGTAACTGGTAG 1692 0.4243 MPPDQRKKSSVDVDFFTEYGEGSRYMIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYIATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSPEAIARIRNEKARRYLSSMRKKKPVPLYQKFPNADPLALRVLERMLAFDPKDRPTAEEALADPYFNGLAKFEREPCAQPVSKMEFEFERRRVTKEDVRELIYRETLEYHPKMLKEHLEGAEPTGFMYPSAVDHFKKQFAYLEEHYGKGGTISPLDRQHASLPRQCVLYSDDSRQNMAEVAADDLSKCCINEVEKPVIDRNGGVAMNRMPLQAPQNIQGVMTNRSVAPRPRKVAGSALHYNCGVAGAEQRRTIKNPSVSAQYAASSCSYPKRNPSCKNERAEDGIEGSKGLPSKPQYIARKVAAAPGGAGSNW 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04120 563 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Tsu04g04120 563 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 471 - -
Tsu04g04120 563 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04120 563 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Tsu04g04120 563 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 9 471 - -
Tsu04g04120 563 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Tsu04g04120 563 MobiDBLite consensus disorder prediction 517 543 - -
Tsu04g04120 563 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04120 563 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Tsu04g04120 563 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04120 563 CDD STKc_TDY_MAPK 24 361 - -
Tsu04g04120 563 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04120 Tsu-Chr4 49732314 49737500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04120 1 563 MAP Kinase Gene Family AT5G19010 75.648 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Tsu04g04120 Pkinase 3.6e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04120 - K04371 gmx:100799442 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04120 04 49732314 49737500 Tsu04g04120 04 49732314 49737500 ECH
Tsu04g04120 04 49732314 49737500 Tsu08g03641 08 54519341 54524545 PCT