Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g04114 | ATGGCACTTAGAAGCGGTAGCATATGCAAACCCCAATTTGTATTATCTCCATGTTCTACAAATTTGAAGCAATCAATCTcagaaatcaaattttcaacGCCAACCAAATTTCCAACCACTCTTTCACTACCAATTTCTACCTCCACCGCTCTTCGCAATGCGCCTTTCTGCTCCATCTCCAGCTCTTCTGTCGAAACTAATAATATGTCTTCTTCAACCAAAATCTTCATTAaagGGCTTCCTCTCGCCATCTCTGAAATGCAGTTAACAGAAGCGTTTTCAGAGTTTGGTGAAGTTACTCGAGTCATGTTTTTGATGGATATGGAATCTGGGAAATCTCTAGGATATGCTTATATTTGGTTTGTCAAGGAAGAGTCTGCGCAATTGGCTACAAAAGTGATGAATGGAAAGTTTTTTCATGGCAGGTTTATTTATGTTACAATTGCAAAACCTGGATCATCAAAAAGTTCAAAGAAGACAACAGCCTACAAATTTTAA | 498 | 0.3695 | MALRSGSICKPQFVLSPCSTNLKQSISEIKFSTPTKFPTTLSLPISTSTALRNAPFCSISSSSVETNNMSSSTKIFIKGLPLAISEMQLTEAFSEFGEVTRVMFLMDMESGKSLGYAYIWFVKEESAQLATKVMNGKFFHGRFIYVTIAKPGSSKSSKKTTAYKF | 165 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g04114 | 165 | Gene3D | - | 52 | 163 | IPR012677 | - | |
Tsu04g04114 | 165 | PANTHER | RNA-BINDING MOTIF PROTEIN, X-LINKED 2 | 25 | 165 | - | - | |
Tsu04g04114 | 165 | SMART | rrm1_1 | 74 | 147 | IPR000504 | GO:0003723 | |
Tsu04g04114 | 165 | CDD | RRM_SF | 75 | 146 | - | - | |
Tsu04g04114 | 165 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 | 25 | 165 | - | - | |
Tsu04g04114 | 165 | SUPERFAMILY | RNA-binding domain, RBD | 65 | 155 | IPR035979 | GO:0003676 | |
Tsu04g04114 | 165 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 73 | 151 | IPR000504 | GO:0003723 | |
Tsu04g04114 | 165 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 75 | 144 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g04114 | Tsu-Chr4 | 49681316 | 49685898 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g04114 | 73 | 155 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 31.325 | 1.52e-07 | 48.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g04114 | - | - | mtr:MTR_4g117350 | 157.532 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu04g04114 | 04 | 49681316 | 49685898 | Tsu04g04114 | 04 | 49681316 | 49685898 | ECH |