Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04114 ATGGCACTTAGAAGCGGTAGCATATGCAAACCCCAATTTGTATTATCTCCATGTTCTACAAATTTGAAGCAATCAATCTcagaaatcaaattttcaacGCCAACCAAATTTCCAACCACTCTTTCACTACCAATTTCTACCTCCACCGCTCTTCGCAATGCGCCTTTCTGCTCCATCTCCAGCTCTTCTGTCGAAACTAATAATATGTCTTCTTCAACCAAAATCTTCATTAaagGGCTTCCTCTCGCCATCTCTGAAATGCAGTTAACAGAAGCGTTTTCAGAGTTTGGTGAAGTTACTCGAGTCATGTTTTTGATGGATATGGAATCTGGGAAATCTCTAGGATATGCTTATATTTGGTTTGTCAAGGAAGAGTCTGCGCAATTGGCTACAAAAGTGATGAATGGAAAGTTTTTTCATGGCAGGTTTATTTATGTTACAATTGCAAAACCTGGATCATCAAAAAGTTCAAAGAAGACAACAGCCTACAAATTTTAA 498 0.3695 MALRSGSICKPQFVLSPCSTNLKQSISEIKFSTPTKFPTTLSLPISTSTALRNAPFCSISSSSVETNNMSSSTKIFIKGLPLAISEMQLTEAFSEFGEVTRVMFLMDMESGKSLGYAYIWFVKEESAQLATKVMNGKFFHGRFIYVTIAKPGSSKSSKKTTAYKF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04114 165 Gene3D - 52 163 IPR012677 -
Tsu04g04114 165 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 25 165 - -
Tsu04g04114 165 SMART rrm1_1 74 147 IPR000504 GO:0003723
Tsu04g04114 165 CDD RRM_SF 75 146 - -
Tsu04g04114 165 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 25 165 - -
Tsu04g04114 165 SUPERFAMILY RNA-binding domain, RBD 65 155 IPR035979 GO:0003676
Tsu04g04114 165 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Tsu04g04114 165 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04114 Tsu-Chr4 49681316 49685898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04114 73 155 Eukaryotic Initiation Factors Gene Family AT2G36660 31.325 1.52e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04114 - - mtr:MTR_4g117350 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04114 04 49681316 49685898 Tsu04g04114 04 49681316 49685898 ECH