Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04113 ATGGATAATAACAATTCATTGTTTCAACAAAAACATCgtaatcataataataacaataaagagAAAGTTATTGTTATTATGGGCGCTACCGGAACCGGGAAATCTAAGTTGGCGATAGATATAGCAACTCATTTTCAACCGGCAGAGATTATCAACTCCGACAAAATTCAAGCTTATCAAGGTCTTGATATTACAACAAACAAAGTTACCGATGAAGAGTGTCGCGGGGTACATCATCATTTACTTGGAACTGTTGATCCTAATTCAAATTTCACATCCAACGATTTTTGCGAGCACGCAACAGAAATAGTTGATTCTATTGTTGGAAGAAATGGGTTACCTATTATAGCCGGTGGTTCGAATTCGTAcattgaagctttggttaatCATTATCCTGAGTTTCGTACAAGGTACGAATGTTGTTTTCTTTGGGTAGATGTTGCATTTCCCGTACTTCATTCGTCGTTATCAACACGAGTTGATCGTATGATTGAAGCTGGTCAAGTCAATGAAGTTCgtgaattttttgacgaaaaaaatCATGATTATACGAGAGGGATACGAAGAGCTATTGGTGTCCCGGAATTTGACGAATTTTTTAGAGCTGAGTTAGAAGGAAGAGTTGATGAAAGAACCATGAAGAAGCTTCTAGAAGTTGCTATTGATGCTCTTAAGATGAATAATATTAAGCTTGCAAATAGACAAGTTTCGAAGATTAATAGGCTTTATGGTATGTGGAAAAGAAACATGCACCGTCTTGATGCTACGGATGTTGTTCTTAAAGAAAGAAATTGGGAGGATTGTGTTTTGGATAAGAGTCTTAGGATTGTCCATAAATTTCTATACGAGGATTGTTACAATCCTAGTgttggtggtggttgtggtgTTGGGTCATCAATTGCTTCCTCAAGTGTGAGTCATCAATTTATATAA 933 0.3365 MDNNNSLFQQKHRNHNNNNKEKVIVIMGATGTGKSKLAIDIATHFQPAEIINSDKIQAYQGLDITTNKVTDEECRGVHHHLLGTVDPNSNFTSNDFCEHATEIVDSIVGRNGLPIIAGGSNSYIEALVNHYPEFRTRYECCFLWVDVAFPVLHSSLSTRVDRMIEAGQVNEVREFFDEKNHDYTRGIRRAIGVPEFDEFFRAELEGRVDERTMKKLLEVAIDALKMNNIKLANRQVSKINRLYGMWKRNMHRLDATDVVLKERNWEDCVLDKSLRIVHKFLYEDCYNPSVGGGCGVGSSIASSSVSHQFI 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04113 310 Gene3D - 20 281 IPR027417 -
Tsu04g04113 310 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 13 284 - -
Tsu04g04113 310 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 149 250 - -
Tsu04g04113 310 Pfam IPP transferase 135 237 - -
Tsu04g04113 310 Pfam IPP transferase 57 134 - -
Tsu04g04113 310 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 13 284 IPR039657 -
Tsu04g04113 310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 135 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04113 Tsu-Chr4 49666536 49667468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04113 136 291 C2H2 Transcription Factor Family AT2G27760 30.108 1.16e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04113 K10760 - gmx:100812928 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04113 04 49666536 49667468 Tsu04g04113 04 49666536 49667468 ECH
Tsu04g04113 04 49666536 49667468 Tsu08g03621 08 54297783 54300132 PCT