Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04108 ATGGGTGGTTCATGGAGTAACGGTAATAACAGGAacacaagaagaagaaacagttACCATGAACACTAtccaccaccacctcctcctCCAGCTTACTATTATCATTACTCTTCTCAGCCTCTCATGCCACAACCTCCTCAAGGTTACTTTCCTCCTCCTCTTCCTCCTCATCAGTACTATTCAAATGGATACAATCCTCAACTTCATAATCATCACCCTACTCCTTACCATGCAACAACAAATACTCAACCATCTGATGTAGATTTAAATGTAAATGTTGTTCAACCTCTACCACTTCCACCACCACCTTCTTATGTTGACCATGAAACCACTAAGAAGGTAAGAAATGATGTCAACTTGCATAAACATACTCTCCAACTCCATCTTGATCCCAACAATCCTCATCACCACCTGATTTCCTTCGATTTCGATGCCCTTTTCGATGGCAGAGTTAGGATCTTCTACTTAGCAAGAGAAGAAGAACATAAATGTAGGTTTGTTCCTCTATTTCCCGAAGCATTTGAGCCGATTACGTTTCCGTTTTTGAAAGGAGTTGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGATTTAGGTTTCTTTGAGTTGGATGATCTTTCAAACCCTTCGCCTGAAGAAGATGTATTTCCCCTTGTAATATGTGCCGAAACAACTCCTTTGGAAGATCATGAAACTCCTGCTGGTTCCTTAGTAGATGCAACCCCTCACATGCAAATAACTCAAGCTGTCTTGGAGAAAATCGATGGCAATGGTCCTTTCCAGGTTAAAGTTATTAGGCAGATTCTATGGATTGATCAAGTTCGTTATGAGCTCCGAGAGTTATATGGAATTGGTAACTCGACAGCACCTGATTTCGATCGTAATGATCCTGGAAAGGAGTGTGTAATATGCATGACTGAACCCAAGGATACTGCTGTCTTACCTTGCCGACACATGTGTATGTGCAGTGAGTGTGCAAAAGCTTTGCTGTTACAATCAGATAAATGCCCTATATGCCGCCAAGCTATTGAGGAACTTATAGAGATCAAGATAAACAATGGTGACCAATGA 1074 0.3976 MGGSWSNGNNRNTRRRNSYHEHYPPPPPPPAYYYHYSSQPLMPQPPQGYFPPPLPPHQYYSNGYNPQLHNHHPTPYHATTNTQPSDVDLNVNVVQPLPLPPPPSYVDHETTKKVRNDVNLHKHTLQLHLDPNNPHHHLISFDFDALFDGRVRIFYLAREEEHKCRFVPLFPEAFEPITFPFLKGVGQKFCQPSGTGIDLGFFELDDLSNPSPEEDVFPLVICAETTPLEDHETPAGSLVDATPHMQITQAVLEKIDGNGPFQVKVIRQILWIDQVRYELRELYGIGNSTAPDFDRNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALLLQSDKCPICRQAIEELIEIKINNGDQ 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04108 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 351 IPR013083 -
Tsu04g04108 357 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 356 - -
Tsu04g04108 357 PANTHER MAHOGUNIN 1 356 IPR045194 GO:0061630
Tsu04g04108 357 Pfam Zinc finger, C3HC4 type (RING finger) 300 346 - -
Tsu04g04108 357 ProSiteProfiles Zinc finger RING-type profile. 302 341 IPR001841 -
Tsu04g04108 357 SUPERFAMILY RING/U-box 301 347 - -
Tsu04g04108 357 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 301 341 IPR045195 -
Tsu04g04108 357 MobiDBLite consensus disorder prediction 1 38 - -
Tsu04g04108 357 SMART ring_2 302 340 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04108 Tsu-Chr4 49618477 49620569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04108 105 357 C3H Transcription Factor Family AT3G06140 59.055 2.64e-98 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04108 - - gmx:102665712 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04108 04 49618477 49620569 Tsu04g04108 04 49618477 49620569 ECH