Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04106 ATGGACGCAACATCAGAAGTTATGAATCAATTCGATGAATCCATGAAGAAACAAATAGCATTACTTTTGAAGGTTGTGCttttaaataaatcattgaAAGAGGATAACGTTCCTTGCGAAATTGACGAGGGTCTCTTTTTGGGTTCTGTTGGTTCTGCGGCGAATAAGGTTGCTTTGAAAAATGTTAATGTTACTCATATCTTGACTGTGGCTGGGAAGATTGCACCTGCTCATCCTGCGGATTTCGTCTATAAAGTTATAGATGTTGCTGACAAAGAAGAGACAAACTTAAGACAATACTTCAACGAgtgttttgattttattgacGAAGCCAAAAGATATGGTGGAAATGTTTTAGTTCACTGTTATGCTGGAAGATCAAGGAGCGTGACTATCATTGTGGCATATCTGATGAAGTCTCGTGGAATGAGCTTATCTGAAGCTCTGCAACATGTAAAGAATAAAAGACCACAAGCAGCTCCAAATCGCGGTTTCATTTGTCAACTGGAAGACTTTGAGAAATCTCTTCAAGACAAGGTAGTGTAG 546 0.3718 MDATSEVMNQFDESMKKQIALLLKVVLLNKSLKEDNVPCEIDEGLFLGSVGSAANKVALKNVNVTHILTVAGKIAPAHPADFVYKVIDVADKEETNLRQYFNECFDFIDEAKRYGGNVLVHCYAGRSRSVTIIVAYLMKSRGMSLSEALQHVKNKRPQAAPNRGFICQLEDFEKSLQDKVV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04106 181 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 1B 19 177 - -
Tsu04g04106 181 ProSiteProfiles Dual specificity protein phosphatase domain profile. 37 178 IPR020422 GO:0006470|GO:0008138
Tsu04g04106 181 Gene3D Protein tyrosine phosphatase superfamily 31 180 IPR029021 -
Tsu04g04106 181 CDD DSP 38 171 - -
Tsu04g04106 181 Pfam Dual specificity phosphatase, catalytic domain 45 174 IPR000340 GO:0008138|GO:0016311
Tsu04g04106 181 SMART dsp_5 37 175 IPR020422 GO:0006470|GO:0008138
Tsu04g04106 181 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 19 177 - -
Tsu04g04106 181 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 177 IPR029021 -
Tsu04g04106 181 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 99 157 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04106 Tsu-Chr4 49582777 49586510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04106 40 177 Protein tyrosine phosphatase (PTP) family AT3G06110 60.145 7.99e-59 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04106 - - aprc:113847529 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04106 04 49582777 49586510 Tsu04g04106 04 49582777 49586510 ECH