Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04103 ATGTTTCCCAAACATTTTGCTATCTTCTTTCTCTTCATCTCTCTAACATCTGCTGCAGACACCACTTCTTGGATCAGAGCCGGTTATTACTATTCCGGCAGTGAAATTTCAGCTTCAGATATTAAATCAACACTCTTCACACATCTCTTATGTGCTTTTGCTTTTATAAACTCCACAAATTACAACATCTTCATAAACTCTTCTGAGCAACACAAATTTTCAACTTTCACAAACACTGTAAAGCTTCAAAATCCATCTGTTATAACTCTTTTATCAATCTACACTGGAAGAGAAAACTCTTCACTTTTTAACTCAATGATAAACCAATCTTCTTATAGAAAATCTTTCATTGCTTCTTCTATTAATACAGCAAGAAAATATGAATTTCATGGCATAGATCTTTGTGGTGTCTTACCAAAACAAGGTAAAGAAGTTGAAAATTTGGCAACCCTTTTGAAAGAGTGGCGAATTGCGATTTCTTCTGAAGCAAGAAACAGTAAAAAATTAGAGTTGGTGTTAGTGATGGCTGGTTATTACATCAAAGCTTCAGATTCCATTAATTACCCTTTTGAATCAATGCAGAAGAATTTAGATTGGGTTCATTTTGTTGCATATGATTATTATCTTCCTAAAAGGGACAGTGTCACAGGTTTTCATGCTGCTTTGTATGGTTTATCTGGTTGGGATAATACTGATTCTGGTATCAAAGAGTGGAGAAAAAGAGGGTTTTCTTCTAACAAACTTTTAATTGGTTTACCTTATCATGGATTTGCATGGACACTTGTGAAACAAGGTGAAGGTGGTGTTGGAAAAGTAGCATCTGGTCCTGCTATTACATTGGATGGTTCAATGGCTTATAAGTTGATAAAAAGTTATATTAGAAGCTTTGGTGATAGGGTGGTTTCACGTTATAATGATACTTTTGTGGTGAATTATTTCACAGTTGCTTCTACTAATTGgattaattttgatgatgtggaagTTATTAAAGAAAAAGTTTCTTATGCAAAGAAAAATGGATTACTTGGTTATAATGTTTTCCAAGTTGGGAATGATGACAATTGGGTCCTTTCAAAGGCAGCTTATGAAATAGATGAAGATCATCATAACAGAAGGTTGCTCATAATTGTTCTGCTTACTACTTTGACTACTGCACTTCTCTTAGGAATAGTAGCATTTTGCTACTACCATCATGGAACAGTGACCACTATTACAAGAATGATATACAAACTGAGGATATATTTATCAGCAGCTGAAGAAGATCTCAATGGAAGTGGTTCTGATTTGATAGTATTTGGTTATCTCACAATTAAAGTAGCAACAGATAACTTCTCAGAAGAAAATAAGCTAGGAGAGGGTGGATTTGGTGCTGTGTACAAGGGAAAATTACGGAAAGGACAGGAAATAGCGGTCAAAAGACTATCAGAAACCTCAAATCAAGGACTTGAAGAGTTCAAAAATGAGATCGCGCTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTTTGGGTTACTGCACAAAAAAGAATGAGAAGCTTCTTATCTATGAATATCTCCCAAACAAAAGCTTAGATCATTTTCTCTTGGATCCAAGCAAATCAATTCTTCTAGATTGGAAGACGCGTGTGAATATCATCGAAGGGATTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTCATTATAATCCACCGAGATCTTAAAGCTAGTAATGTTTTATTAGACCATGAGATGAATCCTAAGATATCAGATTTTGGTATGGCTAGAATTTTCGGAAAATATGAACTTGAAGCAAACACAAGCAGGATCGTGGGAACATATGGGTACGTACCCCCTGAGTATGTCAGAAAAGGCATATACTCACCCAAGTACGACGTTTATAGTTTCGGAGTCCTTCTCTTGCAAATCATAAGTGGAAAGAGAACTTCACGTTATTACGGCCCACATGAAAATATGAACCTTTTGGAATACGCATATGAGCTGTGGATGGAAGGAAGAGGTGCAGAGTTTTTCGACCCTTCATTAGACGATACAACATCACAATGCAAAATAATGAGATGCATGCAGGTAGCTCTTTTGTGTGTTCAAGAGAACTCAGCAGATAGACCTTCCATGTTAGAAGTTGATTCACTGCTCAAGAATGAAGGTGCAGATGTTGGTACACCCAACGTGCCCGCTTTTTCGATGAAAAAACAGGAAGATGATAAGGGAGATACTTCTAACTCTGGGTTcaaattttcttcaatcaatGATGTTACAATTTCTCAGATGGTACCAAGATAA 2292 0.3556 MFPKHFAIFFLFISLTSAADTTSWIRAGYYYSGSEISASDIKSTLFTHLLCAFAFINSTNYNIFINSSEQHKFSTFTNTVKLQNPSVITLLSIYTGRENSSLFNSMINQSSYRKSFIASSINTARKYEFHGIDLCGVLPKQGKEVENLATLLKEWRIAISSEARNSKKLELVLVMAGYYIKASDSINYPFESMQKNLDWVHFVAYDYYLPKRDSVTGFHAALYGLSGWDNTDSGIKEWRKRGFSSNKLLIGLPYHGFAWTLVKQGEGGVGKVASGPAITLDGSMAYKLIKSYIRSFGDRVVSRYNDTFVVNYFTVASTNWINFDDVEVIKEKVSYAKKNGLLGYNVFQVGNDDNWVLSKAAYEIDEDHHNRRLLIIVLLTTLTTALLLGIVAFCYYHHGTVTTITRMIYKLRIYLSAAEEDLNGSGSDLIVFGYLTIKVATDNFSEENKLGEGGFGAVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEIALTARLQHVNLVRLLGYCTKKNEKLLIYEYLPNKSLDHFLLDPSKSILLDWKTRVNIIEGITQGLLYLQEYSNFIIIHRDLKASNVLLDHEMNPKISDFGMARIFGKYELEANTSRIVGTYGYVPPEYVRKGIYSPKYDVYSFGVLLLQIISGKRTSRYYGPHENMNLLEYAYELWMEGRGAEFFDPSLDDTTSQCKIMRCMQVALLCVQENSADRPSMLEVDSLLKNEGADVGTPNVPAFSMKKQEDDKGDTSNSGFKFSSINDVTISQMVPR 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04103 763 CDD STKc_IRAK 450 717 - -
Tsu04g04103 763 Gene3D Glycosidases 39 354 - -
Tsu04g04103 763 ProSiteProfiles Protein kinase domain profile. 444 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04103 763 Gene3D - 254 323 IPR029070 -
Tsu04g04103 763 Pfam Glycosyl hydrolases family 18 29 352 IPR001223 GO:0005975
Tsu04g04103 763 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 759 - -
Tsu04g04103 763 Pfam Protein kinase domain 445 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04103 763 MobiDBLite consensus disorder prediction 725 747 - -
Tsu04g04103 763 Gene3D Transferase(Phosphotransferase) domain 1 520 723 - -
Tsu04g04103 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 565 577 IPR008271 GO:0004672|GO:0006468
Tsu04g04103 763 SMART 2g34 24 352 IPR011583 GO:0008061
Tsu04g04103 763 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 17 759 - -
Tsu04g04103 763 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 24 368 IPR001223 GO:0005975
Tsu04g04103 763 SMART serkin_6 444 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04103 763 SUPERFAMILY (Trans)glycosidases 27 353 IPR017853 -
Tsu04g04103 763 SUPERFAMILY Protein kinase-like (PK-like) 429 713 IPR011009 -
Tsu04g04103 763 Gene3D Phosphorylase Kinase; domain 1 412 519 - -
Tsu04g04103 763 ProSitePatterns Protein kinases ATP-binding region signature. 450 472 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04103 Tsu-Chr4 49545408 49548958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04103 432 763 Receptor kinase-like Gene Family AT4G11530 51.335 1.17e-112 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu04g04103 Glyco_hydro_18 2.2e-50 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04103 - - aprc:113847882 1169.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04103 04 49545408 49548958 Tsu04g04103 04 49545408 49548958 ECH