Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04099 ATGTCGTCTGATAATCTATTCGAAGACCTCAAGAAGGAAAATGTCGATCTTGAAAGTATTCCAATTGAGGAAGTTTTCACGCAGCTAAAATGTAGCAGAGAAGGTCTAACATCAGCTGAGGGAGAGAGTAGGCTACAAATATTTGGTCCTAACAAATTAGAGGAGAAAACAGAAAGCAAGTTCCTTAAATTCTTGGGTTTCATGTGGAATCCACTATCATGGGTTATGGAAGCTGCTGCTATTATGGCCATTGCATTGGCCAATGGAGGGgGCAAGCCGGCAGATTGGCAAGATTTCGTTGGTATTGTTGTGTTGCTCATCATCAACTCGACCATTAGTTTCATTGAAGAAAACAATGCAGGCAATGCCGCAGCAGCTTTAATGGCTGGTCTTGCACCAAAAACCAAGGTGTTGAGAGATGGAAAATGGACTGAGCAAGAAGCAGCAATTTTGGTGCCAGGAGATTTGGTGAGTATCAAGTTGGGAGATATTGTCCCGGCCGATGCCCGTCTCTTGGAAGGAGATCCCCTTAAGATTGATCAATCTGCACTTACTGGCGAGTCACTTCCAGTCACCAAGAACCCCGGTGATGGAGTCTTCTCAGGTTCCACCTGCAAACAAGGTGAGCTTGAGGCTGTTGTCATTGCCACTGGTGTCCATACCTTCTTCGGAAAGGCTGCTCACCTTGTTGATAGCACCAACAATGTTGGTCACTTCCAAAAGGTGTTGACATCAATTGGAAACTTCTGTATCTGCTCCATTGCAATAGGAATGTTGATTGAGATAGTTGTGATGTACCCTATCCAAGAAAGGCCATATAGAGAAGGTATTGACAATTTGTTGGTTCTTCTCATCGGAGGTATTCCGATTGCCATGCCAACGGTTTTGTCCGTGACAATGGCTATTGGGTCTCACCGTTTGTCTCAGCAAGGAGCTATCACCAAGAGGATGACAGCTATTGAGGAAATGGCTGGCATGGATGTTCTCTGCAGTGATAAGACTGGAACTCTCACCCTTAACAAGCTCACTGTTGACAAAAACTTGATTGAGGTGTTCACCCCTGGTGTAGACAAGGACGGTCTTCTCTTGGCCGCTGCTAGGGCTTCCAGGGTTGAAAATCAGGATGCTATTGATGCTTCAATCGTTGCGATGTTGGGTGACCCCAAGGAGGCAAGATCAGGAATCAATGAGGTGCATTTCTTGCCCTTCAATCCCGTGGGTAAACGCACAGCTATTACCTACATTGATGATGAAGGAAATTGGCACAGATGCAGCAAGGGTGCTCCTGAGCAAATTATTGAACTTTGTGAACTCAAGGGAGCGACTTTGAAAAAGGCCCACCAAGTCATTGATCAGTTTGCTGAACGAGGTCTGCGCTCATTGGCTGTTTCTCGCCAGactgTTTCTGCAAAGACCAAGGAGAGTGAAGGCGACGCATGGGAGTTTTTGGGTCTCATGCCACTCTTTGACCCTCCAAGGCATGACAGTGCTGAGACTATTCGACAAGCTCTCGACCTTGGTGTTAATGTTAAGATGATCACTGGTGACCAACTTGCCATTGGAAAAGAAACCGGTCGCAGACTCGGTATGGGAACCAACATGTATCCTTCATCATCTCTTCTTGGTGATAACAAGGACCCTGATATTGCATCAATCTCAATTGATGAACTCATTGAGAAGGCTGATGGATTTGCCGGCGTCTTCCctgAACACAAGTATGAGATTGTGAAGAGGTTGCAAGATAGAAAACACATTTGTGGTATGACTGGTGATGGTGTGAATGATGCACCTGCATTGAAGAAAGCAGACATTGGTATTGCTGTTGCCGACGCAACTGATGCTGCAAGAAGTGCATCTGACATTGTCTTGACAGAGCCAGGACTAAGTGTGATTGTGAGTGCTGTGTTAACTAGCAGAGCCATTTTCCAAAGAATGAAGAACTACACAATCTATGCTGTTTCTATCACTATCCGTATTGTGTTTGGATTCATGCTTGTTGCTTTGATATGGAAGTTTGATTTCTCACCTTTCATGGTCCTCATTATCGCCATCTTGAACGATGGAACCATCATGACCATCTCTAAGGATAGAGTGAAGCCATCACCAGTTCCTGATTCATGGAAACTCAAAGAAATCTTTGCCACTGGAATTGTTCTTGGATCTTACATGGCCATCATCACTGTTGTGTTCTTCTTTTTAGTTCATGACACCGATTTCTTCACCAAAGTTTTTGGTGTGCACCCACTTTCAGACAGTAATGATCAACTTAACTCAGCTTTGTACCTTCAAGTGAGCATTATTAGTCAAGCACTCATCTTTGTGACAAGGTCAAGGAGTTGGTCTTATGTCGAACGCCCTGGCCTGTTACTTCTCTTTGCCTTCTTTGCTGCACAGATGGTGGCAACCGTCATTGCTGTGTATGCACACTGGGGATTTGCTAGAATCAATGGAATTGGTTGGAGATGGGCTGGAGTAATCTGGATCTTCACCATTGTTACTTACATTCCTCTTGACGTCCTCAAATTCCTCATCCGTTTGGGATTGTCCGGCAGGGCCTGGGACAACATGATCGATAATAAGACTGCTTTCACCACAAAGAAGGACTATGGAAGAGGAGAGAGGGAAGCGCAATGGGCTACGGCTCAACGAACACTCCACGGTCTCAAAGTTACAGAATCTAAAAGCAACAGCAACCATCACGAACACTCTGAAATGGCTGAACAAGCCAAGAGACGTGCCGAAGCTGCCAGGCTGAAAGAGCTCCATACACTGAAAGGACATGTTGAATCTGTGGTGAAGTTGAAGGGTCTTGACATTGACACCATCCAACAACACTACACACTCTAG 2847 0.4506 MSSDNLFEDLKKENVDLESIPIEEVFTQLKCSREGLTSAEGESRLQIFGPNKLEEKTESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPADWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEQEAAILVPGDLVSIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGDGVFSGSTCKQGELEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTSIGNFCICSIAIGMLIEIVVMYPIQERPYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFTPGVDKDGLLLAAARASRVENQDAIDASIVAMLGDPKEARSGINEVHFLPFNPVGKRTAITYIDDEGNWHRCSKGAPEQIIELCELKGATLKKAHQVIDQFAERGLRSLAVSRQTVSAKTKESEGDAWEFLGLMPLFDPPRHDSAETIRQALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGDNKDPDIASISIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLKEIFATGIVLGSYMAIITVVFFFLVHDTDFFTKVFGVHPLSDSNDQLNSALYLQVSIISQALIFVTRSRSWSYVERPGLLLLFAFFAAQMVATVIAVYAHWGFARINGIGWRWAGVIWIFTIVTYIPLDVLKFLIRLGLSGRAWDNMIDNKTAFTTKKDYGRGEREAQWATAQRTLHGLKVTESKSNSNHHEHSEMAEQAKRRAEAARLKELHTLKGHVESVVKLKGLDIDTIQQHYTL 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04099 948 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 564 675 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g04099 948 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 102 348 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g04099 948 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Tsu04g04099 948 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Tsu04g04099 948 PANTHER CALCIUM-TRANSPORTING ATPASE 5 928 - -
Tsu04g04099 948 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 846 IPR023298 -
Tsu04g04099 948 Coils Coil 899 919 - -
Tsu04g04099 948 CDD P-type_ATPase_H 35 842 IPR006534 GO:0008553|GO:0016021|GO:0120029
Tsu04g04099 948 Gene3D - 897 948 - -
Tsu04g04099 948 Gene3D - 342 489 IPR023299 GO:0000166
Tsu04g04099 948 SFLD Haloacid Dehalogenase 312 641 - -
Tsu04g04099 948 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Tsu04g04099 948 SUPERFAMILY HAD-like 323 643 IPR036412 -
Tsu04g04099 948 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 35 807 IPR006534 GO:0008553|GO:0016021|GO:0120029
Tsu04g04099 948 MobiDBLite consensus disorder prediction 889 912 - -
Tsu04g04099 948 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Tsu04g04099 948 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Tsu04g04099 948 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Tsu04g04099 948 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Tsu04g04099 948 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Tsu04g04099 948 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Tsu04g04099 948 Gene3D - 327 626 IPR023214 -
Tsu04g04099 948 Pfam E1-E2 ATPase 132 309 - -
Tsu04g04099 948 MobiDBLite consensus disorder prediction 893 912 - -
Tsu04g04099 948 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Tsu04g04099 948 Gene3D - 95 816 - -
Tsu04g04099 948 SFLD p-type atpase 312 641 IPR044492 -
Tsu04g04099 948 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Tsu04g04099 948 PANTHER PLASMA MEMBRANE ATPASE 5 928 - -
Tsu04g04099 948 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g04099 948 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g04099 948 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g04099 948 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g04099 948 PRINTS H+-transporting ATPase (proton pump) signature 761 782 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g04099 948 Gene3D - 133 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04099 Tsu-Chr4 49523072 49528350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04099 1 948 Primary Pumps ATPases AT3G42640 83.333 0.0 1618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04099 K01535 - gmx:100798717 1635.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04099 04 49523072 49528350 Tsu04g04099 04 49523072 49528350 ECH