Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04085 ATGGCGTTTCACGAGCATCTGCAACACGAAATAGCATACCAGAGATTcacagaagaagaagatgaagaaagagCACCATGGATTAACAATAACAACAGTGTAAGCGCGCGTCAACAGAATTTCATGCACTTAGAACCGGAGAGAAGGGAGAAAAGCATGGATCGGAACCGGAGTGAGAACAATTGTGAAACGGAAGAGTTAAAGGGATACAAAGCGGAGATATTAGGACATCCACTTTACGATCAATTATTATCGGCGCATGTTTCGTGTTTACGAATTGCAACGCCGGTGGATCAGCTTCCGAGAATCGATGCTCAGCTTCAACAATCGCAGCGTGTTCTTCAAAAATATTCTTCTGTTGGAATTGGAAATATGGATCCCAAGGAGCTTGATCACTTTATGACGCATTATGTTCTTCTGCTGTGTGCCTTCAAAGAACAGTTGCAACAACATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTTCAGGTGAAGGAACTGGAGCAACAATGTCAGACGATGAAGAGGAGCAGGCAGAGAGTAATGCCAAGTTATACGAAGGAAGCGGCTTTGATGGCGGAGTTGATACTCTTGGCTTTGGTCCTCTTGTCCCCACCGAGACCGAAAGGTCTTTGATGGAGCGAGTTAGGCTTGAGCTGAAGCATGAGCTCAAACAAGGTTACAAAGAGAAGATTGTAGATGTAAGAGAAGAAATTCTAAGAAAGAGAAGAGCAGGGAAGCTCCCTGGGGACACCACCTCCCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTACCCTACTGTAAGCTTTATCATCAATATTAATTTACAGATATATTTGCTCTGTTGA 903 0.4341 MAFHEHLQHEIAYQRFTEEEDEERAPWINNNNSVSARQQNFMHLEPERREKSMDRNRSENNCETEELKGYKAEILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLQKYSSVGIGNMDPKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSSGEGTGATMSDDEEEQAESNAKLYEGSGFDGGVDTLGFGPLVPTETERSLMERVRLELKHELKQGYKEKIVDVREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTVSFIININLQIYLLC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04085 300 SMART ELK_2 234 255 IPR005539 GO:0003677
Tsu04g04085 300 Pfam KNOX2 domain 127 174 IPR005541 GO:0003677|GO:0005634
Tsu04g04085 300 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 18 285 - -
Tsu04g04085 300 SMART KNOX2_2 119 175 IPR005541 GO:0003677|GO:0005634
Tsu04g04085 300 ProSiteProfiles ELK domain profile. 234 254 IPR005539 GO:0003677
Tsu04g04085 300 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 18 285 - -
Tsu04g04085 300 Gene3D - 227 290 - -
Tsu04g04085 300 SMART KNOX1_2 68 112 IPR005540 GO:0003677|GO:0005634
Tsu04g04085 300 MobiDBLite consensus disorder prediction 175 196 - -
Tsu04g04085 300 Pfam ELK domain 234 255 IPR005539 GO:0003677
Tsu04g04085 300 Pfam KNOX1 domain 70 111 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04085 Tsu-Chr4 49364152 49370393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04085 70 285 Homeobox Transcription Factor Family AT5G25220 80.909 7.77e-129 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04085 - - gmx:100803673 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04085 04 49364152 49370393 Tsu04g04085 04 49364152 49370393 ECH