Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04083 ATGGCGTTTGATCAAAATTCTGTTCCAAAGGATCTGCGTGTATTGAATGTGGCTCCAATAATGGTGGAGGAGACTCTCATTTCGCCGGCAAGCGTCACCTCGCCTCCGACTCCTGATTCAGCTTCCGATTATTTCTATCCTGCTTCGGCCCCCGCGTCAACAGCCTGGTGCGTCCGCCCTATTGTGAGTCCTCCTTCTATTGGATTAAACTATGGTTCCGGTTATGGTAACCGTGTTGTGGCTGGAAATGCATTGAATTTAGGAAATTGGGTAGGGACtagtaatagtagtaataataataataataatagcattAATGCTTTGCATTGTAATGATGGTGTTAATGTGAATGTAAGTGGTTTTTCTTATGGTGGTCTTGGTGGAAATAGATCGGTTGATGATGCCTCGGATGATTCGAGTGGTAGGAAAGTTAAATTTTTGTGTAGTTTTGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGTGTGTTGAGATATGTTGGAGGGCGGACAAGGATAATTAGTGTTAGGAAAGATGTGAGTTTTAATGAGTTGGTCCAGAAAATGGTAGATACTTATGGACAACCTGTGGTTATTAAGTATCAGTTACCCGAGGAGGATCTTGATGCGTTGGTTTCCATTGCTTGTCCTGATGATGTTGAGAATATGATGGAGGAGTATGGAAAATTGGTTGAGAGATCTCCTGATGGTTCTGCTAAATTGAGGGTTTTTTTGTTTCCTATGTCGGAGGTTGATATTTCTAGTGCAGCGCAGGTCGGAGATTTGCAGGATACCGGGcagaaatattttgatgctgTGAATGGTATTGTAGATGTGAATGGGGTTTCTGTTGGGTTCAAGAGGAAAGAGAGTGTTACAAGTGCAGCTTCAACACAAAATTCTGATTTGAGTGGGATAGAGACTATTGATAGCTCTGTTGCCGGTCAAGGGGATTCGTCGCCCTGCATGTTATCGCCTAGAGAGTATGTGGCTACTTCTCCAGACACAAGTGCACATTTTCTGGTTTCTGACTCCAGCACACCAGTTTACTCAGGTGCTTCTCCTGTTTCATTTGGCACACCTTTGAGTAAGACCGGTCCGTTATACCCTTCATATATGCAGAATGAGATTGAGTTAGAAAAGCCTGTTCCTGTTACTTTGTCCCAGCAACCATTTGAATTGCATCAATCAAGAATGGAAATTCCACCTTCACCTTATTTGAACCACGGAGAGTATGTTCAGCTGCCTCCCCAGATGGGGTTCGCAAATTCTCACCTTTTAGGAAAGATGGGGCCTTTTTTCTCCCAACAACCGTTTCATAGTAATGCTTCTGGATTAGCTTACCATCAGGCCATCCCCGGAGCACAAATGGCAATGACTCAACCTTCTTCTCGTCTTGGTATAAGACCAAATTTCATCCAGCCACAACCATTAATACAAACACAACATAATCATCTGAACCAATATAGTGATGAAAATACATCAGGAATAAGGATTGTCCAGCTTCCTTCTGAACACAACTACAATACATATCAGGTTCCAGTAAATCAAGTTCCCGCGAATCAAGTTCCATCTGTCATAGTTGGGGGTAATTGTGGTTGGGTTCAGGTTCCTCCACAACAGCACGAGCATGGGTTATCATCTCAACAACAAGTAATTACCTCAGAGCAAATCCTTAGAGCCGAGGGATGTTCTATGTGTCAGAAAAAGCTGCCTCACGCCCATTCAGATCCAGTGGTTCAGGATCAACACGATGGCAGTTCAGGTCCAGTCTCTGATTCACGCCCAAGTTACAATAGTTTTCCGACGGAGGACAACGTAAAAACTCAAGCAACAAAGAGGGTTGAGCCTATGGTGGCATCACCCTTAAAGGAAGGCATTGTTGAACAAGGGTATAGCACACGGCCAAGTGTCATTAGCAAATCGAAAGCTCATAATGGAGTAAGACCTTGTACTGATAATGCTGTTATTTCTCATAATTTTGAGCCTCAGAATGAAGGTGGGAcgatttttatacaaaatccaaaagaatttgATCACCCCATGAATTCATGTATCCAAGAAACAATTGGTAGGATAGGTGAAAAACATTCTTCTGGGGATGGGCTGGGGGCTATTGGAACACCACCATTGTCTTATCCGGATGATATTGTCCACCAGCATGCGACGCCGGTTGAAATCTGGGTTAAACAAGATGATCTACTGAATAAACATGTTAATAATGATATACCTATAGTTGATGGAACGCCTATACATACTTCAGAGTGCACCGCTCAAGGATCTCCCAAAAAATACACCAATGAGCTTACTGGTGTCATTTCAAAATCAGATGCAGTAGATAATTGGATTAGACAGGGATATCTAAGACCTGTTGATGGAAAGAATGACACACTCGAGATAAACATGGCGGAAGGTTATGTAGGTGATGATCAATGCTTGCTTCCAGTTGATAAATCATTAGATTACAACAGCCAGATTGCTGCAGAGGAAGAGGTGATTCTGGATAATAACTTTGGCACATCAAAATTGATAGTTgatgcaaataaaattaagatgaTAGCTGTGCAACCATGTTCTTCTAAGGAAATTTCATTCAGACGCAATTCCAGGACAGGGGAATACAATGATGTTGTACAATCACCTATGTTGGATGTTACTCAATCAAAGATTGTAAACCATCACTTGGATGATTCAACATCATCTACATCATCGCCATCTTTCTTGTTTGGGGATATGCAGGATTCTCCAAACTCAGTTTTTGGCTATCAGGACCCTTGGAATATACAACATGGTACCTTCTTTCAACCTTCTGTTCTGAGCAAAGTAACATCGGAGAAAGAAACCTATTCTCATAAGGATTACTTTGGTGAAAATCCAGGAACCTACAAGAAATCAAATTTGGATGCACAATTGGATGGTGACCTCTACGAGTCATTCAAACAGaatttaacttttgaaaatggttggtgtGACAAAGGTTCAACCGAAGACCAACAACTTAAAGTTGTTGCTGAAGATGTAGCAGCTTCTGTTCTGCACCCATGCACTCCTTCAAATCCTAACTTGCAAGCTGAAGATGTTTCTTGTCACGAAAACAGTCAGGATGGTAATGTTCAAAATAATCTAATACATGCGAAGTGTAGAGATATAACTCagGATGTCAAGAGTAACCTACCAGAGAAGGGAAATTTTGGCTTTCCAACATCGGGTGTTGGACGTTTGCAGATTATAAAGAACTGTGACCTTGAAGAGCTGACAGAATTGGGTTCTGGTACCTTTGGGACTGTTTATCATGGAAAATGGAGGGGAACTGATGTTGCAATTAAGCGAATAACTGATAGATGTTTTGCTGGAAAGCCTTCGGAACAAGAGCGCATGAGAGACGACTTCTGGAATGAGGCAATCAAGCTTGCTGACTTGCACCATCCAAACGTGGTTGCTTTCTATGGTGTTGTGCTTGATGGCCCAGGAGATTCCGTGGCAACAGTAACTGAGTACATGACTAATGGTTCTCTCAGAAATGCCTTGCAAAAGAATGAGAGGAATCTAGACAAGCGCAGACGTCTTATGATTGCAATGGATGTGGCCTTTGGAATGGAATACCTGCATGGAAGAAATATAGTACACTTTGACTTGAAAAGCGACAACTTGCTTGTGAATCTCCGAGATCCACACCGCCCAATATGCAAGGTTGGTGACTTGGGTCTATCCAAAGTAAAATGTCAGACACTGATCTCCGGAGGTGTGAGAGGAACACTACCATGGATGGCTCCAGAGCTACTGAACGGAAGCAGCAGCCTTGTTTCAGAGAAGGTTGATGTATTTTCATTCGGTATCGTGATGTGGGAACTCTTAACTGGCAATGAGCCATACACTGATTTGCACTATGGTGCTATTATAGGTGGTATTGTGAGCAACACTTTGCGCCCTTCAATTCCCGAATCTTGTGATCCGGAATGGTGTTTGTTGATGGAGAGATGTTGGGCCTCAGAACCATCGGAGAGACCGAACTTCACTGACATTGCTGATGAATTACGTTCTATGGCAACCAAACGCCAAAATCAACAGCTACAACCCTCTCATTTGCACACACAGCTCAACAAATGA 4104 0.4162 MAFDQNSVPKDLRVLNVAPIMVEETLISPASVTSPPTPDSASDYFYPASAPASTAWCVRPIVSPPSIGLNYGSGYGNRVVAGNALNLGNWVGTSNSSNNNNNNSINALHCNDGVNVNVSGFSYGGLGGNRSVDDASDDSSGRKVKFLCSFGGKILPRPSDGVLRYVGGRTRIISVRKDVSFNELVQKMVDTYGQPVVIKYQLPEEDLDALVSIACPDDVENMMEEYGKLVERSPDGSAKLRVFLFPMSEVDISSAAQVGDLQDTGQKYFDAVNGIVDVNGVSVGFKRKESVTSAASTQNSDLSGIETIDSSVAGQGDSSPCMLSPREYVATSPDTSAHFLVSDSSTPVYSGASPVSFGTPLSKTGPLYPSYMQNEIELEKPVPVTLSQQPFELHQSRMEIPPSPYLNHGEYVQLPPQMGFANSHLLGKMGPFFSQQPFHSNASGLAYHQAIPGAQMAMTQPSSRLGIRPNFIQPQPLIQTQHNHLNQYSDENTSGIRIVQLPSEHNYNTYQVPVNQVPANQVPSVIVGGNCGWVQVPPQQHEHGLSSQQQVITSEQILRAEGCSMCQKKLPHAHSDPVVQDQHDGSSGPVSDSRPSYNSFPTEDNVKTQATKRVEPMVASPLKEGIVEQGYSTRPSVISKSKAHNGVRPCTDNAVISHNFEPQNEGGTIFIQNPKEFDHPMNSCIQETIGRIGEKHSSGDGLGAIGTPPLSYPDDIVHQHATPVEIWVKQDDLLNKHVNNDIPIVDGTPIHTSECTAQGSPKKYTNELTGVISKSDAVDNWIRQGYLRPVDGKNDTLEINMAEGYVGDDQCLLPVDKSLDYNSQIAAEEEVILDNNFGTSKLIVDANKIKMIAVQPCSSKEISFRRNSRTGEYNDVVQSPMLDVTQSKIVNHHLDDSTSSTSSPSFLFGDMQDSPNSVFGYQDPWNIQHGTFFQPSVLSKVTSEKETYSHKDYFGENPGTYKKSNLDAQLDGDLYESFKQNLTFENGWCDKGSTEDQQLKVVAEDVAASVLHPCTPSNPNLQAEDVSCHENSQDGNVQNNLIHAKCRDITQDVKSNLPEKGNFGFPTSGVGRLQIIKNCDLEELTELGSGTFGTVYHGKWRGTDVAIKRITDRCFAGKPSEQERMRDDFWNEAIKLADLHHPNVVAFYGVVLDGPGDSVATVTEYMTNGSLRNALQKNERNLDKRRRLMIAMDVAFGMEYLHGRNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGNEPYTDLHYGAIIGGIVSNTLRPSIPESCDPEWCLLMERCWASEPSERPNFTDIADELRSMATKRQNQQLQPSHLHTQLNK 1367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04083 1367 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 106 888 - -
Tsu04g04083 1367 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 892 1351 - -
Tsu04g04083 1367 ProSitePatterns Protein kinases ATP-binding region signature. 1087 1118 IPR017441 GO:0005524
Tsu04g04083 1367 MobiDBLite consensus disorder prediction 580 607 - -
Tsu04g04083 1367 Gene3D - 164 246 - -
Tsu04g04083 1367 SUPERFAMILY CAD & PB1 domains 159 252 - -
Tsu04g04083 1367 PRINTS Tyrosine kinase catalytic domain signature 1163 1176 IPR001245 GO:0004672|GO:0006468
Tsu04g04083 1367 PRINTS Tyrosine kinase catalytic domain signature 1315 1337 IPR001245 GO:0004672|GO:0006468
Tsu04g04083 1367 PRINTS Tyrosine kinase catalytic domain signature 1271 1293 IPR001245 GO:0004672|GO:0006468
Tsu04g04083 1367 PRINTS Tyrosine kinase catalytic domain signature 1200 1218 IPR001245 GO:0004672|GO:0006468
Tsu04g04083 1367 Gene3D Phosphorylase Kinase; domain 1 1075 1168 - -
Tsu04g04083 1367 SMART serkin_6 1081 1347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04083 1367 Pfam PB1 domain 163 246 IPR000270 GO:0005515
Tsu04g04083 1367 PANTHER SERINE-THREONINE PROTEIN KINASE 106 888 - -
Tsu04g04083 1367 MobiDBLite consensus disorder prediction 573 609 - -
Tsu04g04083 1367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1206 1218 IPR008271 GO:0004672|GO:0006468
Tsu04g04083 1367 CDD STKc_MAP3K-like 1087 1344 - -
Tsu04g04083 1367 CDD PB1_UP2 147 245 - -
Tsu04g04083 1367 SMART PB1_new 158 247 IPR000270 GO:0005515
Tsu04g04083 1367 Gene3D Transferase(Phosphotransferase) domain 1 1169 1367 - -
Tsu04g04083 1367 ProSiteProfiles Protein kinase domain profile. 1081 1348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04083 1367 MobiDBLite consensus disorder prediction 1348 1367 - -
Tsu04g04083 1367 Pfam Protein tyrosine and serine/threonine kinase 1084 1344 IPR001245 GO:0004672|GO:0006468
Tsu04g04083 1367 SUPERFAMILY Protein kinase-like (PK-like) 1074 1342 IPR011009 -
Tsu04g04083 1367 PANTHER SERINE-THREONINE PROTEIN KINASE 892 1351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04083 Tsu-Chr4 49348431 49355623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04083 93 613 MAP Kinase Kinase Kinase AT3G46920 37.477 1.03e-79 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Tsu04g04083 PK_Tyr_Ser-Thr 2.1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04083 - - mtr:MTR_4g116520 2214.5