Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04079 atggGTTCCAGCTCTAGTAGACTCGGGTCTCGCCCTTCTTCTACTCCAAgagtcaacaacaacaaccaccgcATCAGATTCTCTTCCTTTCTCTGCGGCGCTTCTACCTCTCGCTCCATTTCTCAgatggAAGAACATCAATACGAAGAACTTCAAGCTAATTCGGCTAgagattttgatgatgaaattcaGAAAGTTGCTCATGAATCATCATTATCATGTACAGAAGAAGCTAGAATTAGTTGCTGTCCTCAAGCTGAAACTTCAACCTCAGCTGATACGAGAACCCAGTTCTGCGGGAATGATGCTGTTGAAGGTTCTTCTGGAAATGTTGCAACAAGTAGTCAGAGGAATTGCTTGTCTGAACATAAGGAGCTAGTCCCTCCTTATCGGGTAAGTGCTGGTCATAGTCATCCTGAATCCTATAGTGATAGTAACAACACAGCTAGTACTTCATTTGTTGAACAGCAATCTTCAGACCCAGTTTCTTTAAATGTTTCTGCTAACAAGGATAGAATCAATAATGTTGATGATCCAGTTGTTAGTGGTGTTTCTCGAATCTCTCACGAGACGGAGCGTCCAAGGAGCTCAATCTCTCAAGAGCATGGAAATCCCAGTTCTGGTGAAATTTCTGTTGAGAATGACACGGATGCAGACACATCTGTCCAGAGTTCTTCGATTCCTGTTTCTGAAGCTTCTATTACACCACCAACTTCTCAAGTTCCTGAAGATGAACGCCGTCATGAGACAATACCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAATAGTGCAGGGAAATGATGGTCTGTTTCAAGTTGATGTGGTGGCAATATCTTCCAACATTTTATCTGGCAGCAATGCAGATGCCGATGATCATGATGCCAGAAGAAGTGGTAGAAGATTATTCTGGGATGCTTTTTCACAGCGTAGTTCTAGAAGGCTTGGTGATTCTCCAACTATCGTTTTCTCCACTGGAGGTGCTGATGATTCAGGATCTCAAGATCGGTGGCATGTTGATTTTGATGAGGATTTATCAAATGATGGGGTTAGAGGTGCATCTGGATATCGGGGCAGTATTCACAGATTGAATGAAAGAGTGCGAAACTCAAGATCAGAGATATGGGAAAGGCTTCGTGGAGGCCTTGATGAGATTGGTCGGTTGAACACTTCTTGTCCATTAGGACTCCATCCAGATGGTATGTGCTCGTGCGAGTCATTCCCATTGGCTGAAGAATCTAGCACTCGATCAAGTATTTCAAGAATAGTTATGCTGGCCGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATAGGCAACCTGGATCTGTTTCCCTATCTACGGTCTCACTCCCTGCACCTGAATCAATTGTGGACTCTTTCCCTCTGAAGTCTCACAAAAAGGCTGATGGAGGCAATGGTGATGAACAATGTTACATATGCCTGGCTGAGTATGAAGATGGGGACCAAATACGAGTTCTTCCTTGCAAGCATGAATATCACATGTCGTGTGTTGATAAGTGGCTGAAGGAAATACATGGTGTATGTCCTCTGTGTCGCGGCAATGTTTGTGGAGGGTTAACTGAGTCATCAAACGACTCAGAAGTGCAGTCTCGGTGA 1620 0.4253 MGSSSSRLGSRPSSTPRVNNNNHRIRFSSFLCGASTSRSISQMEEHQYEELQANSARDFDDEIQKVAHESSLSCTEEARISCCPQAETSTSADTRTQFCGNDAVEGSSGNVATSSQRNCLSEHKELVPPYRVSAGHSHPESYSDSNNTASTSFVEQQSSDPVSLNVSANKDRINNVDDPVVSGVSRISHETERPRSSISQEHGNPSSGEISVENDTDADTSVQSSSIPVSEASITPPTSQVPEDERRHETIPSGLGILVSNREIVQGNDGLFQVDVVAISSNILSGSNADADDHDARRSGRRLFWDAFSQRSSRRLGDSPTIVFSTGGADDSGSQDRWHVDFDEDLSNDGVRGASGYRGSIHRLNERVRNSRSEIWERLRGGLDEIGRLNTSCPLGLHPDGMCSCESFPLAEESSTRSSISRIVMLAEALFEVLDEIHRQPGSVSLSTVSLPAPESIVDSFPLKSHKKADGGNGDEQCYICLAEYEDGDQIRVLPCKHEYHMSCVDKWLKEIHGVCPLCRGNVCGGLTESSNDSEVQSR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04079 539 ProSiteProfiles Zinc finger RING-type profile. 478 520 IPR001841 -
Tsu04g04079 539 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 537 - -
Tsu04g04079 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 525 IPR013083 -
Tsu04g04079 539 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 537 - -
Tsu04g04079 539 MobiDBLite consensus disorder prediction 1 21 - -
Tsu04g04079 539 MobiDBLite consensus disorder prediction 131 249 - -
Tsu04g04079 539 SMART ring_2 478 519 IPR001841 -
Tsu04g04079 539 MobiDBLite consensus disorder prediction 198 240 - -
Tsu04g04079 539 CDD mRING-H2-C3H2C2D_ZSWM2 477 520 - -
Tsu04g04079 539 Pfam Ring finger domain 477 520 IPR001841 -
Tsu04g04079 539 SUPERFAMILY RING/U-box 473 523 - -
Tsu04g04079 539 MobiDBLite consensus disorder prediction 138 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04079 Tsu-Chr4 49330387 49334574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04079 392 524 C3H Transcription Factor Family AT5G45290 52.000 9.10e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04079 - - gmx:100783604 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04079 04 49330387 49334574 Tsu04g04079 04 49330387 49334574 ECH