Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04076 ATGTGTGTGCAAGAGGGTGAACAAGTTGATCAAGATAACAATATGGAAGAACTTGATAACAAAAGAATTTCATGGCCTATGCATTGTGATCTCTTACATGCCCAGATGGATAATACAGAAAAAGACTCTTCTTTTAGAATTTCCAGTGACCAGATTAGTGCTGTTAATTCATTTCCTCTGGAAAGCATTTGTGAGGATACAGAGATTACAGAGAAAAAACAGAACCTGATAAATTTCGTCCCTACGCTTCGGTCGGGGGAATGGTCTGATATTGGAGGTCGACCTTATATGGAGGATACTCACATATGCATTGGAGACTTGGCAAAGAAATTTGGTTATAATGTAATCAACGACGAAGCGATTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTTCGCGATCATCTGCCGAGGGTGATTGTTGAGGATGCTGACTTCCCTCTTGAACTTGAGAAGGTGGTAACAAGGTCATTTTTGGAGATTGATTCAGAGTTTGCAAAAACATGCTCTATTGACTCTTCTCTATCTTCTGGTACAACTGCATTGACTGCAATTATATTTGGAAGGTCTTTACTTGTGGCCAATGCCGGGGACTGCCGCGCTGTTTTGTCCCGAGCCGGAGCAGCTATAGAAATGTCAAAAGATCACAGGCCATTATGCATGAAAGAAAGGATGAGGATTGAGTCGCTTGGCGGATTTGTTGACGATGGTTACTTGAATGGACAGTTAGGCGTCACGCGTGCTCTAGGCAACTGGCATCTCGAAGGAATGAAGGAAATGAGTGGAAGAGGTGGACCTTTGAGTGCTGAACCAGAACTTAAATTGACGACATTGACAAAAGATGACGAGTTTTTGATAATTGGAAGTGATGGAATATGGGATGTTTTTCGTAGCCAAAATGCCGTAGATTTTGCTAGGAGGAAGCTTCAACAGCATAATGATGTTAAACAATGTTGCAAGGAAATAATAGGAGAAGCAATAAAGAGAGGAGCAACAGATAATTTAACTGTTGTGATGATATGCTTTCAATCAGATCCACCAACACCTTTGGTTGTTGAAAGGCCTAGAGTCAGAAGAAGCATATCTGCTGAGGGACTTCAGAATCTTAAATGCTTCTTAGAAGGATGA 1149 0.4125 MCVQEGEQVDQDNNMEELDNKRISWPMHCDLLHAQMDNTEKDSSFRISSDQISAVNSFPLESICEDTEITEKKQNLINFVPTLRSGEWSDIGGRPYMEDTHICIGDLAKKFGYNVINDEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLEIDSEFAKTCSIDSSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRAGAAIEMSKDHRPLCMKERMRIESLGGFVDDGYLNGQLGVTRALGNWHLEGMKEMSGRGGPLSAEPELKLTTLTKDDEFLIIGSDGIWDVFRSQNAVDFARRKLQQHNDVKQCCKEIIGEAIKRGATDNLTVVMICFQSDPPTPLVVERPRVRRSISAEGLQNLKCFLEG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04076 382 Pfam Protein phosphatase 2C 96 341 IPR001932 -
Tsu04g04076 382 CDD PP2Cc 84 349 IPR001932 -
Tsu04g04076 382 PANTHER PROTEIN PHOSPHATASE 2C 1 370 IPR015655 GO:0004722|GO:0006470
Tsu04g04076 382 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Tsu04g04076 382 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 370 - -
Tsu04g04076 382 ProSiteProfiles PPM-type phosphatase domain profile. 84 349 IPR001932 -
Tsu04g04076 382 Gene3D - 64 353 IPR036457 -
Tsu04g04076 382 SUPERFAMILY PP2C-like 74 350 IPR036457 -
Tsu04g04076 382 SMART PP2C_4 74 347 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04076 Tsu-Chr4 49317039 49319894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04076 63 382 PP2C-type Phosphatase Gene Family AT2G25620 59.259 1.01e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Tsu04g04076 PP2C 6.6e-66 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04076 K14803 - gmx:100782648 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04076 04 49317039 49319894 Tsu04g04076 04 49317039 49319894 ECH