Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04072 ATGGGAAGCAACAGTGTTGAAAAGATCCCTATTAATATTAGCACTGGAAGTTCAGAAACCACTATTGAGATAAAGATCAAAACACTGGATTCACAAACTTATACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGTTATCAGAACAGCAGCGCTTAATTTGCCAAGGGAAAGTTCTAAAGGATGATCAACTATTGTCTGCCTACCATGTTGAAGATGGTCACACACTCCATCTGGTTGTGAGGCATCCTGATCTGCCACCTCCAGGAAGTCTGCCCAATCATTCAGTGACTGAGCCAAACTCAAGCACAAGCCATGGTCACAGTACTCAGGTCGCTCCAGGTGTTTTCATTGAAACTTTCAATGTTCCTGTTCAGGGTGATGGAGTTCCACCTGAAATAAATAGgATTGTTTCTGCTGTTCTAGGCTCTATTGCTGGACTTCCAAATTTTGCAAGTGGCGGTGAAGGGATTGCTGTCAGGGATCATGATTCCCAAGGCCTTGGAAGAACTTCAGATTCTAGTGGAATATCAGATTCGTTACGTCCAATACTTGATCAAACTGGTTTACGGAGTTTGTCAGATAGATTACGGAATACTTTTGGAGTACCAGCATCAGGTTCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAGTACCTAAGTCATATGAGCCATGAATTTGATACAATTGTTAGAGAAGTCAGACAAGGGGGGAATAATGCCCAAGCAGCTGAGGGTCATAGTAATGAAGAAATGGGATCTACTTCTTCACGTTTGGGTTCAACACCAGCAAATCTTTCATCACCCGCATCCTTGGCAGAAGTCTTGCTTTCTACCAGACGAATGATCATTGAACAAGCTGGGGAATGCATACTTCAACTGGCAAGACAACTGGAGAATCAATCAGATGTAACTGACGCCTCATCGCGATCAAGCTTTCAATCTAGGGCTATGAGGACTGGAACATTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGTCGTACAACCATGACATTGCGTTTGGGTCAAACACCGTCTGAAGCTGTAGTCAATGGTGGACCTGCAGTTTTTATATCACCTACTGGTCCTAATCATATCATGGTTCAGcctcttccttttccaGCTGGAGCAAGCTTTGGTGCTGTCCCTGTAGGAGCTGCACAGTCTGACTCAAGTTTAGGTAGTGGACTTGGCTCAAATTTTTTCCCAAGGCGTATCGATATACAGATAAGACGAGGCACTTCAACAACCACACCCAATGCCAATCAAGATGACCGTGGGGATACTCAATCTGCTTCGGTACAAAGAAATCCAGCTGAAAGTTCTGCTAGTCAAGCAACATCTAGGCGTCCAGATGCATCTATTGCTGGAGAGCCAGCAATAAGGATAGTGCCAATTAGAACTATGGTTGCAGCAGTACCTGCTCCCTTGGGCCGTCCTTCTTCAGAACCATCTGGTAATTCTACAGGGATTTACCATCCAGTTCTTGGGAGATTTCAACGTGTAACTACAGGGCAGGCAAATAGTGAACAAGGATCTCAATCAGCAAGTCAGCATCGTGCTGCACAACATTCAACTCCTGAATCCACATTGGAAAGGCAAAGCGCGGAAGACTCTGCAAGGAATGGTACCTCATCAACTCCAAACACGAGACAAGAGCCATCTAATTCTCGtgttgtaaatataaatattttgtcaGCTGGTGGGCCTCAAAACAACCAAGAATCTGATAGACAGATACCAAGCAGTGTACTTCAGTTTTTAAGAACACTCTTTCCTGGTGGAGAAATTCACGTGGAGGATTCAAGCTTACAAGGAGCAAATGTGGGTTCCACCTCAGCGCATGCTGCAACATCAAGGAGTTCTCCCCAAGTCCCTGATGCTGGACCTCCTGTTAGTGATGAAGGATTATTTTTGTCTAATGTACTCCGTGAGATCATGCCGGTCATATCTCAACGTGTAGGGTCTGAGAGAAATCCTTCTGAAGATCAAACAGCTCAAGATTCATCAACTCAGGTTGAAACTCATGCTGGGACATCACGCGGTCGCAGACACAGTGGTTCTGAATCAAGCCGTCCAGATGCAAAACGCCGAAAGGTTTCCCTTCTACTTTCGAGTTTGTAA 2187 0.4408 MGSNSVEKIPINISTGSSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSEQQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRHPDLPPPGSLPNHSVTEPNSSTSHGHSTQVAPGVFIETFNVPVQGDGVPPEINRIVSAVLGSIAGLPNFASGGEGIAVRDHDSQGLGRTSDSSGISDSLRPILDQTGLRSLSDRLRNTFGVPASGSLGSLQPPVIPDSLTTLSQYLSHMSHEFDTIVREVRQGGNNAQAAEGHSNEEMGSTSSRLGSTPANLSSPASLAEVLLSTRRMIIEQAGECILQLARQLENQSDVTDASSRSSFQSRAMRTGTLFYNLGAFLLELGRTTMTLRLGQTPSEAVVNGGPAVFISPTGPNHIMVQPLPFPAGASFGAVPVGAAQSDSSLGSGLGSNFFPRRIDIQIRRGTSTTTPNANQDDRGDTQSASVQRNPAESSASQATSRRPDASIAGEPAIRIVPIRTMVAAVPAPLGRPSSEPSGNSTGIYHPVLGRFQRVTTGQANSEQGSQSASQHRAAQHSTPESTLERQSAEDSARNGTSSTPNTRQEPSNSRVVNINILSAGGPQNNQESDRQIPSSVLQFLRTLFPGGEIHVEDSSLQGANVGSTSAHAATSRSSPQVPDAGPPVSDEGLFLSNVLREIMPVISQRVGSERNPSEDQTAQDSSTQVETHAGTSRGRRHSGSESSRPDAKRRKVSLLLSSL 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04072 728 SUPERFAMILY Ubiquitin-like 16 101 IPR029071 -
Tsu04g04072 728 Gene3D - 15 109 - -
Tsu04g04072 728 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 1 721 - -
Tsu04g04072 728 MobiDBLite consensus disorder prediction 699 720 - -
Tsu04g04072 728 MobiDBLite consensus disorder prediction 106 121 - -
Tsu04g04072 728 MobiDBLite consensus disorder prediction 672 728 - -
Tsu04g04072 728 PRINTS Ubiquitin signature 53 73 IPR019956 -
Tsu04g04072 728 PRINTS Ubiquitin signature 32 52 IPR019956 -
Tsu04g04072 728 PRINTS Ubiquitin signature 74 95 IPR019956 -
Tsu04g04072 728 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Tsu04g04072 728 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 1 721 - -
Tsu04g04072 728 MobiDBLite consensus disorder prediction 432 472 - -
Tsu04g04072 728 Pfam Ubiquitin family 24 93 IPR000626 GO:0005515
Tsu04g04072 728 MobiDBLite consensus disorder prediction 627 647 - -
Tsu04g04072 728 MobiDBLite consensus disorder prediction 675 698 - -
Tsu04g04072 728 MobiDBLite consensus disorder prediction 95 121 - -
Tsu04g04072 728 MobiDBLite consensus disorder prediction 525 578 - -
Tsu04g04072 728 MobiDBLite consensus disorder prediction 260 284 - -
Tsu04g04072 728 MobiDBLite consensus disorder prediction 432 480 - -
Tsu04g04072 728 SMART ubq_7 22 93 IPR000626 GO:0005515
Tsu04g04072 728 MobiDBLite consensus disorder prediction 627 654 - -
Tsu04g04072 728 MobiDBLite consensus disorder prediction 259 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04072 Tsu-Chr4 49288238 49297526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04072 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 2.05e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04072 K23390 - gmx:100783070 1042.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04072 04 49288238 49297526 Tsu04g04072 04 49288238 49297526 ECH