Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04040 ATGAGATATTGCATAGGAACAGGAGCATATGGAAGTGTTTACAAGGCGCAATTACCATGTGGAAAAGTTGTTGCCTTAAAAAAACTTCACGGCTATGAAGCAGAAGTGCCGGCATTTGATGAAAGTTTCagaaatgaagtgagaatattATCAGAAATAAGGCACCGACATATTGTGAAGCTTTATGGATTCTGTTTGCACAAAAGAATCATGGTTTTGATCTATCAATACATGGAGAAAGGAAGCTTGTTCTCAATCTTGTATGATGATGTAGAAGCCATGGAATTCAATTGGAGAAAAAGAGTTAACATTGTTAAAGGAGTTGCATCTGCTCTTTCATATCTTCATCATGATTACACAACTCCAATAGTGCATAGAGACATATCTAGTGGTAATATCTTGCTGAACAATGAGTGGCAGCCTAGTGTTTCTGACTTTGGCACAGCCCGACTCCTTCAATATGATTCATCCAATCGAACAATAGTTGCTGGAACAATTGGATATATAGCTCCTGAGCTTGCCTATACTATGGTTGTGAGTGAAAAGTGTGATGTATATAGCTTTGGAGTAGTGGCACTTGAAACTTTAATGGGAAGGCACCCTCAAGAAATATTGTCGTCACTTCATTTAGCATCAACTCAAAGCATGAAATTATGTGAAGTATTAGACCAACGTCTCCCATTTCCAAATAATGGGATGGTTTTACTTGACATAATTCATGTAGCGGTAATAGCATTTGCATGCTTAAATTTCAATCCTAGCTCTCGACCAACAATGAAACATGTATCACAGAGTTTTGCCACTGAGCTTACACCATCAACCATTCCTATGAATGAAATTTCAATAAAGCAGCTTATGAGTCAAGAACTCAAAACATTATTTCATATTGTCAACCATTGA 900 0.3656 MRYCIGTGAYGSVYKAQLPCGKVVALKKLHGYEAEVPAFDESFRNEVRILSEIRHRHIVKLYGFCLHKRIMVLIYQYMEKGSLFSILYDDVEAMEFNWRKRVNIVKGVASALSYLHHDYTTPIVHRDISSGNILLNNEWQPSVSDFGTARLLQYDSSNRTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLMGRHPQEILSSLHLASTQSMKLCEVLDQRLPFPNNGMVLLDIIHVAVIAFACLNFNPSSRPTMKHVSQSFATELTPSTIPMNEISIKQLMSQELKTLFHIVNH 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04040 299 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 292 - -
Tsu04g04040 299 SUPERFAMILY Protein kinase-like (PK-like) 4 264 IPR011009 -
Tsu04g04040 299 Pfam Protein kinase domain 5 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04040 299 Gene3D Transferase(Phosphotransferase) domain 1 78 279 - -
Tsu04g04040 299 ProSitePatterns Protein kinases ATP-binding region signature. 5 27 IPR017441 GO:0005524
Tsu04g04040 299 ProSiteProfiles Protein kinase domain profile. 1 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04040 299 PIRSF ILK 4 267 - -
Tsu04g04040 299 ProSitePatterns Tyrosine protein kinases specific active-site signature. 123 135 IPR008266 GO:0004672|GO:0006468
Tsu04g04040 299 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 292 - -
Tsu04g04040 299 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04040 Tsu-Chr4 49044533 49045664 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04040 2 171 Receptor kinase-like Gene Family AT4G08850 55.491 2.31e-60 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu04g04040 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04040 - - mtr:MTR_7g009970 516.924