Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04019 ATGTCTAATAATCATCTATCCAATGGTGAATCAGAGCATCTTATTCGCCAACCCTTATTATCTTCACAAAGATCCATTGTCAACTCTACTTCTCAAGTTGCAATTGTTGGTGCCAATGTCTGCCCAATTGAGAGTCTTGATTAtgaGATTTTTGAGAATGAATTCTTTAAGCAGGATTGGAGAAGCAGAGGGGTTTATCAGATTTTTCAGTATATATGTATGAAATGGTTTTTGTGTTTAATGATTGGTATGATTGTTGGTTTTATTGGATTTTGTAACAATCTTGCTGTTGAAAATCTTGCTGGCATCAAATTTGTTATCACATCCAATATGATGTTGGAAAGGAGGTTCTTGCTTGCCTTTGTTATATTCTTTGCTTCAAATTTGAGTCTCACACTTTTTGCATGTATAATAACGGCTTTTATAGCACCTGCTGCTGCCGGTTCAGGAATATCAGAGGTGAAGGCTTACTTAAATGGCGTTGATGCGCCAGGAATATTTACTGTACCAACTCTTTTTGTTAAGATTATTGGAAGCATTACGGCAGTGTCATCATCTCTTGTTGTTGGGAAGGCAGGGCCTATGGTGCATACAGGTGCATGTGTGGCAGCATTGTTGGGTCAAGGAGGTTCCAAAAGATTTGGAATAACATGGAGATGGTTACGATTTTTTAAGAATGACCGTGATCGACGAGATCTAATAATATGTGGATCAGCAGCTGGAATTGCTGCCGCTTTTCGTGCCCCTGTTGGCGGCGTCTTGTTTGCTCTTGAAGAGATGGCATCTTGGTGGAGAACTGCTCTTCTATGGAGAGCTTTCTTTACCACAGCAACGGTAGCAATTTTCCTTCGAGCCATGATTGATGTATGTCTAAGTGGCAAATGTGGGCTATTCGGTAAAGGGGGACTTATAATGTTTAATGCTTATTCAGCAAGTATTTCGTACCATTTGGGAGATGTTCCTCCTGTGTTTATTCTTGCTGTTGTAGGAGGGTTACTTGGAagcttatttaattttatgacgAATAAAGTTCTTCGCATGTACAACGTTATCAATGAGAAAGGCACCATTTACAAACTTTTGCTTGCTTGTTTAATCTCCATTTTTACATCATGTCTTCTTTTTGGATTACCATTCTTTGCATCTTGCCGAATTTGTCCTCCTGATGCAGTCGAGCCTTGTCCAACAATAGGTCGATCCGGTATCTACAAGAAATTCCAATGCCCTTCTAATCACTATAACGGCCTCGCCAGCCTCATTTTTAACACAAACGACGATGCTATCAAAAACCTATTTAGCATGAACACCGACAATGAGTTTGAGTTTTCATCgatgttgatttttttcttcatatgtCTCTTCCTAACTATCTTTAGCTGCGGAATTGTTGCCCCTGCCGGTCTTTTTGTGCCAATTATCGTGACTGGTGCATCGTATGGACGCATGGTTGGAATATTGGTTGGAAGTTCCAATCTTAGCCATGGCCTTTATGCTGTACTCGGCGCTGCTTCTCTTCTTGGTGGATCAATGAGGACGACGGTTTCTCTGTGTGTAATTATCCTAGAATTGACCAATAACTTGTTACTGCTACCCCTAATAATGATGGTGCTTTTGGTGTCTAAAAGTGTAGCAAATGTTTTCAATTGTAATGTATATGACCTTATAATGAAAGCCAAAGGTTTGCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTAACAGTAGGCGATGTAGTCACAGGTCCACTTCAGATGTTTAATGGTATCGAGAAAGTTCGAAACATTGTTTTTGTCCTCAGAACAACAACGCACAATGGATTTCCTATTATCGATGAGCCTCCACATTCGGAAGCTCCGGTTTTATTTGGTATAATACTTCGTGACCACCTTATCACATTGTTAAAGAAGAAAGCTTTCTTGCCTGCACCTATGGCAAATAGTTATGATATATTAAGACAGTTTTCAGCAGATGATTTTGCAAAGAAGGGTTCAATTGAACGTGTAAAGATTGAGGATGTACAGTTAACGGAGGAAGAGATGGGCATGTACATCGATCTACATCCTTTTACTAATGCTTCGCCTTACACTGTTGTGGAAACAATGTCACTGGCGAAGGCACTTATACTTTTCCGAGAAGTAGGTTTAAGACACTTGCTTGTGATACCCAAGATCCCTGGTAGATCGCCCGTGGTAGGTATATTGACGCGGCATGATTTCACGCCAGAACATATATTGGGTATGCATCCTTTTTTGGTAAGAAGCAGATGGAAAAGATTAAGATTTTGGCaaacttttcttgaaaaaattCTTTCAGGCCTTTGA 2328 0.3913 MSNNHLSNGESEHLIRQPLLSSQRSIVNSTSQVAIVGANVCPIESLDYEIFENEFFKQDWRSRGVYQIFQYICMKWFLCLMIGMIVGFIGFCNNLAVENLAGIKFVITSNMMLERRFLLAFVIFFASNLSLTLFACIITAFIAPAAAGSGISEVKAYLNGVDAPGIFTVPTLFVKIIGSITAVSSSLVVGKAGPMVHTGACVAALLGQGGSKRFGITWRWLRFFKNDRDRRDLIICGSAAGIAAAFRAPVGGVLFALEEMASWWRTALLWRAFFTTATVAIFLRAMIDVCLSGKCGLFGKGGLIMFNAYSASISYHLGDVPPVFILAVVGGLLGSLFNFMTNKVLRMYNVINEKGTIYKLLLACLISIFTSCLLFGLPFFASCRICPPDAVEPCPTIGRSGIYKKFQCPSNHYNGLASLIFNTNDDAIKNLFSMNTDNEFEFSSMLIFFFICLFLTIFSCGIVAPAGLFVPIIVTGASYGRMVGILVGSSNLSHGLYAVLGAASLLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLLVSKSVANVFNCNVYDLIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQMFNGIEKVRNIVFVLRTTTHNGFPIIDEPPHSEAPVLFGIILRDHLITLLKKKAFLPAPMANSYDILRQFSADDFAKKGSIERVKIEDVQLTEEEMGMYIDLHPFTNASPYTVVETMSLAKALILFREVGLRHLLVIPKIPGRSPVVGILTRHDFTPEHILGMHPFLVRSRWKRLRFWQTFLEKILSGL 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04019 775 ProSiteProfiles CBS domain profile. 691 752 IPR000644 -
Tsu04g04019 775 Pfam CBS domain 695 741 IPR000644 -
Tsu04g04019 775 Pfam Voltage gated chloride channel 132 544 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04019 775 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04019 775 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04019 775 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04019 775 PRINTS Chloride channel signature 464 484 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04019 775 PRINTS Chloride channel signature 495 511 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04019 775 PRINTS Chloride channel signature 513 532 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04019 775 PRINTS Chloride channel signature 551 565 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g04019 775 CDD CBS_pair_voltage-gated_CLC_euk_bac 567 744 - -
Tsu04g04019 775 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 11 766 - -
Tsu04g04019 775 SUPERFAMILY Clc chloride channel 53 566 IPR014743 -
Tsu04g04019 775 Gene3D Clc chloride channel 67 565 - -
Tsu04g04019 775 Gene3D - 566 741 IPR046342 -
Tsu04g04019 775 PANTHER CHLORIDE CHANNEL PROTEIN 11 766 - -
Tsu04g04019 775 SUPERFAMILY CBS-domain pair 567 741 IPR046342 -
Tsu04g04019 775 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g04019 775 PRINTS Plant CLC chloride channel signature 416 432 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g04019 775 PRINTS Plant CLC chloride channel signature 49 57 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g04019 775 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g04019 775 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04019 Tsu-Chr4 48875703 48880427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04019 6 762 Ion Channels AT5G33280 73.615 0.0 1117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04019 K05016 - gmx:100817901 1227.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04019 04 48875703 48880427 Tsu04g04019 04 48875703 48880427 ECH