Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04018 ATGGATGTAACTGTTTTGTTCTTGGTGCTATTCTTGCAATTGTCAACAATTTTTGGGTCTGAAGTTGTGTTACAGACAAAGGATTGTGGCAATAATTTGTTAGCAAGTTCATATTCTAGTCATGGTGAGGAGTTTTTCTACATAAATAGGAATGTTGTAAACAAAGTTGATTTCTGTAAAGCTCTTCAATTGTATATTGCAAACGGTTGTGATTTGAAGGATTACTTTGAAAGCAACAACTGTGTGTTGGATTTGGATGTTACTTTTGTGAATTTGCCTTCAAAAGGAGGAAGGAAACTTTTGCTGAAAGATTTAAACAATAATTCGACATCACAAGGAGAGTCTAAGTCTGTGTCAAGCAACCAAGTTGGAATTTTTGCAGGTGGAGCTTTGTTGGTATGTTGTGCTGTTGTTTGTCCTTGTTTCTATGGGAAGAGAAGGAAGGCAACTTCTCATGCTGTTCTGGAAAAGGACCCAAATTCAATGGATTTAGGTTCCTCATTTGAACCATCTGTTTCTGATAAGATTCCGGCTAGTCCACTTCGGGTTCCACCTAGTCCATCAAGATTCTCAATGTCTCCAAAACTCAGTAGACTTCAGTCATTACATCTCAACCTGAGCCAGGTTTCAAAAGCTACTCGTAATTTTTCAGAAACGTTACAAGTTGGAGAAGGAGGTTTTGGAACTGTTTACAGGGCTCAATTAGATGATGGTCTGGTCGTGGCTGTAAAGCGTGCAAAAAGGGAACATTTTGAGAGTTTGAGAACAGAATTCAGCAGTGAAGTCGAACTTCTGGCCAAAATTGATCATCGAAACCTTGTGAAGCTTCTTGATTATATTGACAAAGGAAACGAACGTATCCTTATTACTGAGTTTGTGCCAAATGGTACTCTTAGAGAACATTTGGATGGTTTGCGTGGAAAAATTCTGGATTTCAATCAGCGCCTCGAAATCGCAATTGATGTTGCTCATGGATTGACCTATCTGCATCTGTATGCAGaaaaacaaattatCCATCGAGATGTGAAATCATCCAACATTCTTCTGACTGAAAGCATGCGGGCTAAAGTCGCtgattttggatttgcaaaGCTTGGTCCCGTAAACAATGACCATACTCACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGATCCTGAGTATATGAAAACATACCATCTCACTCCTAGAAGTGATGTTTACTCATTTGGAATTTTGCTTTTAGAAATTCTGACTGGCCGTCGTCCCGTGGAGTTGAAAAAAAGTGCTGAAGAGCGAGTTACATTAAGATGGGCCTTCAGGAAATACAATGAAGGAAGTGTGGTGGAACTGCTTGATCCTTTAATGCAAGAAGCTGTAAAAACAGATGTTGCTGTGAAGATGTTTGATTTGGCATTTAACTGTGCAGCACCAGTAAGAACAGATAGGCCTGATATGAAAACAGTTGGGGAGCAATTGTGGGCAATAAGAGCAGATTACCTCAAGAGTAGTGCAAGTACAACTGCATGA 1515 0.3894 MDVTVLFLVLFLQLSTIFGSEVVLQTKDCGNNLLASSYSSHGEEFFYINRNVVNKVDFCKALQLYIANGCDLKDYFESNNCVLDLDVTFVNLPSKGGRKLLLKDLNNNSTSQGESKSVSSNQVGIFAGGALLVCCAVVCPCFYGKRRKATSHAVLEKDPNSMDLGSSFEPSVSDKIPASPLRVPPSPSRFSMSPKLSRLQSLHLNLSQVSKATRNFSETLQVGEGGFGTVYRAQLDDGLVVAVKRAKREHFESLRTEFSSEVELLAKIDHRNLVKLLDYIDKGNERILITEFVPNGTLREHLDGLRGKILDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFAKLGPVNNDHTHISTKVKGTVGYLDPEYMKTYHLTPRSDVYSFGILLLEILTGRRPVELKKSAEERVTLRWAFRKYNEGSVVELLDPLMQEAVKTDVAVKMFDLAFNCAAPVRTDRPDMKTVGEQLWAIRADYLKSSASTTA 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04018 504 Pfam Protein tyrosine and serine/threonine kinase 221 488 IPR001245 GO:0004672|GO:0006468
Tsu04g04018 504 ProSiteProfiles Protein kinase domain profile. 216 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04018 504 PANTHER OS07G0166700 PROTEIN 12 495 IPR045272 GO:0004714|GO:0006468
Tsu04g04018 504 ProSitePatterns Protein kinases ATP-binding region signature. 222 244 IPR017441 GO:0005524
Tsu04g04018 504 CDD STKc_IRAK 222 488 - -
Tsu04g04018 504 SUPERFAMILY Protein kinase-like (PK-like) 197 491 IPR011009 -
Tsu04g04018 504 Gene3D Phosphorylase Kinase; domain 1 187 292 - -
Tsu04g04018 504 SMART serkin_6 216 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g04018 504 PANTHER NODULATION RECEPTOR KINASE-LIKE PROTEIN 12 495 - -
Tsu04g04018 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672|GO:0006468
Tsu04g04018 504 Gene3D Transferase(Phosphotransferase) domain 1 293 502 - -
Tsu04g04018 504 MobiDBLite consensus disorder prediction 166 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04018 Tsu-Chr4 48868162 48873306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04018 122 492 Receptor kinase-like Gene Family AT3G46290 38.320 2.29e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Tsu04g04018 PK_Tyr_Ser-Thr 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04018 - - aprc:113845864 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04018 04 48868162 48873306 Tsu04g04018 04 48868162 48873306 ECH