Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g04009 ATGATCATTTCCGAGAAAAATCGTAGAGAGATCTCTAAATACCTTTTCCAAGAGGGAGTTTGTTATGCAAAGAAGGATTACAATCTGGCAAAGCATCCAGATATTGATGTGCCAAATCTGCAAGTGATTAAGCTCATGCAGAGCTTCAAATCAAGGGAATATGTTAGGGAAACTTTTGCTTGGATGCACTATTACTGGTTTCTTACCAATGATGGAATTGAGTTCCTTAGGACTTATCTCAATCTTCCATCTGAGATTGTTCCAGCTACTTTGAAGAAACAGGCTAAGCCAGCTGGTGCAAGGCCATTCGGTGGTGATCGCCCTAGGGGTCCACCTCGATTTGAGGGAGAAAGGAGATTCGGTGGTGACCGTGATGGATATCGTGGAGGTCCTAGAGGACCTGGTGGTGAGTTCGGTGGAGAAAAGGGTGGAGCTCCAGCCGACTATAGACCTTCTTTCGGGGGTCCTGGTGGACGACCTGGCTTCGGCCGTGGTTCTGGTGGTTTAGGAGCTCCAACTAGTTCCAATGATGCTTAA 537 0.4674 MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGARPFGGDRPRGPPRFEGERRFGGDRDGYRGGPRGPGGEFGGEKGGAPADYRPSFGGPGGRPGFGRGSGGLGAPTSSNDA 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g04009 178 PANTHER 40S RIBOSOMAL PROTEIN S10 1 176 IPR037447 -
Tsu04g04009 178 Gene3D - 1 104 IPR036388 -
Tsu04g04009 178 MobiDBLite consensus disorder prediction 108 126 - -
Tsu04g04009 178 MobiDBLite consensus disorder prediction 93 178 - -
Tsu04g04009 178 Pfam Plectin/S10 domain 3 94 IPR005326 -
Tsu04g04009 178 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g04009 Tsu-Chr4 48776515 48778481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g04009 1 153 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 75.484 3.03e-72 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g04009 K02947 - gmx:100500445 228.024