Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03998 ATGGCAACACAACCTGAGCATCCAATGAAGGCCTTTGGTTGGGCAGCTAGAGATTCTTCTGGTGTTCTCTCCCCTTACAATTTCTTTAGAAGagaaacaaatgaaaaagatgtggcattaaaaatattgtattgtGGGATATGTCACACAGATCTTCACCTAATGAAGAACGAATTGGGCATATCCACCTATCCACTAGTACCTGGGCATGAAATTGTTGGTATAGTGACAAAGGTGGGAAGCAAAGTAGAAAAGTTCAAAGTTGGAGACAAAGTAGGTGTTGGCTACATAATTGACTCATGTCAATCATGTCAAAATTGTACCGAAAATCTTGAAAGTTATTGTCCCCAACATATACCCACATGTGGTGCCAAGTGTCGCGATGGCATCACATATGGAGGTTACTCTGACTCAATCGTTGTAGACGAGCACTTTGTGGTTCATATTCCTGATGGTTTACCACTTGAAGTTGCTGCTCCTCTTCTTTGCGCCGGTATCACAGTGTATAGTCCTCTTCGATATTTTGGGCTCGACAAGCCTGGTCTATATATAGGTGTTGTTGGTCTTGGTGGACTTGGGAGAAAGATGGTAGTTGGAAGTTTTATTGGAGGAATGAAAGAGACTCAAGATATGATTAATTTTGCTGCAAAACACGATGTAAAACCTACCATTGAAGTCATTCCTATGGATTATGTTAACATTGCAATGGATCGACTCCTCAAAGCAGATGTCAAATATCGATTTGTGATTGACATCGGGAACACTCTCAAACCAAGCTCTTAA 783 0.3934 MATQPEHPMKAFGWAARDSSGVLSPYNFFRRETNEKDVALKILYCGICHTDLHLMKNELGISTYPLVPGHEIVGIVTKVGSKVEKFKVGDKVGVGYIIDSCQSCQNCTENLESYCPQHIPTCGAKCRDGITYGGYSDSIVVDEHFVVHIPDGLPLEVAAPLLCAGITVYSPLRYFGLDKPGLYIGVVGLGGLGRKMVVGSFIGGMKETQDMINFAAKHDVKPTIEVIPMDYVNIAMDRLLKADVKYRFVIDIGNTLKPSS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03998 260 CDD CAD1 12 251 - -
Tsu04g03998 260 Gene3D - 165 194 - -
Tsu04g03998 260 Gene3D - 195 222 - -
Tsu04g03998 260 PANTHER ALDEHYDE REDUCTASE 3 193 - -
Tsu04g03998 260 PANTHER ALDEHYDE REDUCTASE 193 259 - -
Tsu04g03998 260 Gene3D - 2 260 - -
Tsu04g03998 260 SUPERFAMILY GroES-like 18 181 IPR011032 -
Tsu04g03998 260 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 245 IPR036291 -
Tsu04g03998 260 Pfam Alcohol dehydrogenase GroES-like domain 36 148 IPR013154 -
Tsu04g03998 260 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 3 193 - -
Tsu04g03998 260 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 193 259 - -
Tsu04g03998 260 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03998 Tsu-Chr4 48682806 48687357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03998 194 259 Monolignol Biosynthesis Gene Families AT4G37990 66.667 1.30e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03998 - K23232 pavi:110772149 309.686