Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03993 ATGGAGAtggacaacaacaacaacaacaacaacaagtgTGGATGTTGGTCTGTCCTTAAACGTGGTGTTTGTAAACCCTCATCTTCTTCTAGACACTCTCCTAACACTATCCCTCGTACTAGTGTTGTTCATGATGcagCAACTGAGACGCGATACCTGAATGCTAGCAATCGAGAACTGTGTCCTCCGAATGAAGCTAGACTCTCTTCTGATAATCCTGATCCCCCACCTCAGGAAAACAAGGCTCCTTGTCAGCTCCTTCAATTCACATTTCAAGAGCTGAAATCTGCAACTGGAAATTTCAGACCTGATAGCATTCTTGGTGAGGGTGGATTTGGTTATGTTTTTAAAGGATGGATTGAGGAAGGTGGAACTGCCCCGGCAAAACCTGGTTCAGGAGTTACGGTAGCTGTTAAAAGCTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTGATTTTCTTGGACAGCTTCACCATCCCAACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACTCGTGGAAGTCTAGAGAATCATCTTTTCAGAAGAACCGTGCCTCTTCCATGGTCCAACAGGGTGAAGATTGCACTTGGTGCTGCTAAAGGATTGGCTTTTCTCCATAATGGACCAGAACCAGTCATTTACAGAGATTTCAAAACATCAAACATTTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTCGGTCTAGCAAAAGCAGGTCCTCAAGGAGACAAAACACACGTTTCTACTAGAGTTGTTGGAACTTACGGTTATGCTGCTCCAGAATATGTCATGACAGGACACTTAACTGCTAAGAGTGATGTTTATAGTTTCGGAGTTGTGTTACTCGAGATTTTAACAGGAAGAAGATCGATGGACAAGAAGCGTCCAAGCGGGGAACAAAATCTTGTTTCATGGGCTAGACCGTATTTAGCTGACAAGCGGAAACTTTACCAACTAGTTGATCCTCGCTTGGAACTAAACTATTCTTTAAAAGCAGTGCAGAAAATTGCTCAGTTAGCTTATAGTTGCCTCAGTAGAGACCCTAAATGCCGTCCAaacatggacgaagttgtgaACGCTCTGACACCATTGCAGGATCTTAACGACTTTGCTATCTTGTCTTATCACTCTCGTTTATCTCaacaaggaagaagaaagaagaaaccaGACGGAACTCCGCATATCACTTATACACATTCCAAGAGCATGAGGGCTTCGCCTTTGAATACCGGAAAACACCTACGATGA 1305 0.4084 MEMDNNNNNNNKCGCWSVLKRGVCKPSSSSRHSPNTIPRTSVVHDAATETRYLNASNRELCPPNEARLSSDNPDPPPQENKAPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEEGGTAPAKPGSGVTVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKAVQKIAQLAYSCLSRDPKCRPNMDEVVNALTPLQDLNDFAILSYHSRLSQQGRRKKKPDGTPHITYTHSKSMRASPLNTGKHLR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03993 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Tsu04g03993 434 MobiDBLite consensus disorder prediction 398 434 - -
Tsu04g03993 434 ProSiteProfiles Protein kinase domain profile. 101 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03993 434 Pfam Protein tyrosine and serine/threonine kinase 105 380 IPR001245 GO:0004672|GO:0006468
Tsu04g03993 434 SUPERFAMILY Protein kinase-like (PK-like) 83 388 IPR011009 -
Tsu04g03993 434 Gene3D Transferase(Phosphotransferase) domain 1 187 397 - -
Tsu04g03993 434 ProSitePatterns Protein kinases ATP-binding region signature. 107 139 IPR017441 GO:0005524
Tsu04g03993 434 CDD STKc_IRAK 107 383 - -
Tsu04g03993 434 PANTHER OS01G0588500 PROTEIN 78 400 - -
Tsu04g03993 434 MobiDBLite consensus disorder prediction 57 81 - -
Tsu04g03993 434 Gene3D Phosphorylase Kinase; domain 1 77 186 - -
Tsu04g03993 434 PANTHER OS01G0588500 PROTEIN-RELATED 78 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03993 Tsu-Chr4 48609401 48612701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03993 89 395 Glycoside Hydrolase AT3G07070 54.662 6.51e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu04g03993 PK_Tyr_Ser-Thr 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03993 - - gmx:100785385 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03993 04 48609401 48612701 Tsu04g03993 04 48609401 48612701 ECH