Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03991 ATGATGGAGCTGGAGCTTCATTTGGGCCTTGCTCTCTCCACTTATAATTCATGTGCCTATGATGCTACTACTAAAATCCATTTTCCTTTGAACCATAATACTAATAAGAAACGAAGTTTTTCTCAACTAGTCTTGGAGCATGCAGCTGAAAATTCTAGTACAACCAACCTTCCCACTCTTTCTCTTCTCCCATTAACTCCTGGCCATTCAGATGAGCATGATCATCAACACTGCAGTCATAGTTCCAACACCACCATCACCAAGAGCGATGAGAATGATGAAGAAGCACTAATCGGATGGCCACCGGTTAATCATCAAAGGAAGAAACTTCGTTGTAATGATGAGGAGGATGATTATGATCATAATCAAAGGAATTTTGTGAAGGTGAAGATGGAGGGTGAAGGAATAGCTAGAAAGGTTAATCTAACCACGCACCATTCATTTCACACTCTCAACCAAACTTTGATCAACATGTTTGGAAAATGTGGTGATGGTCAACAGTATGAACTGGTTTATCAAGACAAAGAAGGTGATTGGCTTCTTGCTCAAGATATTTCATGGAGAAGTTTTACTGAGTGTGCGCAACGCCTCAAATTGCTCAAGAGTAGAGGATAA 615 0.4033 MMELELHLGLALSTYNSCAYDATTKIHFPLNHNTNKKRSFSQLVLEHAAENSSTTNLPTLSLLPLTPGHSDEHDHQHCSHSSNTTITKSDENDEEALIGWPPVNHQRKKLRCNDEEDDYDHNQRNFVKVKMEGEGIARKVNLTTHHSFHTLNQTLINMFGKCGDGQQYELVYQDKEGDWLLAQDISWRSFTECAQRLKLLKSRG 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03991 204 Gene3D - 119 204 - -
Tsu04g03991 204 MobiDBLite consensus disorder prediction 64 92 - -
Tsu04g03991 204 Pfam AUX/IAA family 164 202 IPR033389 -
Tsu04g03991 204 Pfam AUX/IAA family 29 162 IPR033389 -
Tsu04g03991 204 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 2 202 - -
Tsu04g03991 204 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 202 IPR003311 GO:0005634|GO:0006355
Tsu04g03991 204 SUPERFAMILY CAD & PB1 domains 120 199 - -
Tsu04g03991 204 ProSiteProfiles PB1 domain profile. 124 204 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03991 Tsu-Chr4 48567923 48570586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03991 124 202 B3 DNA Binding Superfamily AT1G19220 33.333 1.40e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu04g03991 AUX_IAA 3.5e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03991 K14484 - gmx:100808466 180.644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03991 04 48567923 48570586 Tsu04g03991 04 48567923 48570586 ECH