Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03975 ATGTCAAGCTGCAGCATCGATGTTGCACCTGCTGAACAACTCTGCTATATCCCTTGCAACTTTTGCAATATTGTTCTTGcgGTGAGTGTTCCATGCAGTAGCTTGTTTGATATAGTGACCGTTCGATGTGGTCACTGCACAAATCTATGGTCTGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGCACCTAGCCAGCAGGGCATGAATATTAATCCAGAGTATAGGATTAGAACTGCAGCAGGATCAGGTTCCAAATACAGCAACGATAGGATTGCAATGCGTACTACTGCACCACCACCAACTACTCAAGAAAGGGTTGTTAACCGCCCTCCCGAGAAGAGGCAGCGAGTACCTTCTGCTTATAACCAGTTCATAAAGGAAGAGATTCAGAGGATTAAGGCTAATAATCCTGATATTAGTCACAGAGAAGCTTTCAGTACTGCTGCCAAGAACtgGGCACATTTTCCTCATATTCATTTTGGGCTCATGTTGGAGACCAACAATCAAGCTAAGATGGAGAATGTGTCTGAGAAGCGTTTGATGTCAAGGGCTGCACTAATGAACAAATGA 588 0.4456 MSSCSIDVAPAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQAPSQQGMNINPEYRIRTAAGSGSKYSNDRIAMRTTAPPPTTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLETNNQAKMENVSEKRLMSRAALMNK 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03975 195 Gene3D High mobility group box domain 107 186 IPR036910 -
Tsu04g03975 195 PANTHER AXIAL REGULATOR YABBY 5 1 185 - -
Tsu04g03975 195 MobiDBLite consensus disorder prediction 100 123 - -
Tsu04g03975 195 SUPERFAMILY HMG-box 104 161 IPR036910 -
Tsu04g03975 195 Pfam YABBY protein 10 168 IPR006780 GO:0007275
Tsu04g03975 195 PANTHER PROTEIN YABBY 6-RELATED 1 185 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03975 Tsu-Chr4 48414528 48419118 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03975 7 178 C2C2-YABBY Transcription Factor Family AT2G26580 72.000 5.06e-85 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Tsu04g03975 YABBY 9.2e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03975 K25796 - gmx:100499942 321.242