Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03969 ATGGTATCGGCATTTAGGCGAATTGTGTCACCCTGTTGGAGGCCATCTATTGTGGGCGAAAATTCTGGTAGATATGGCGATACAAGTGGACGCACCGATGGTTTGTTGTGGTATAAAGATTCCGGAAGACATGCAAATGGTGAATTCTCAATGGCTGTTGTTCAAGCAAACAATTTGTTGGAGGATCATAGTCAAGTTGAATCAGGACCCATGAGCTTGATTGATGGAGGTACTCGAGGTACTTTTGTTGGTGTATATGATGGCCATGGAGGTCCAGAAACTGCCCGATTTGTCAATGAACGCCTATTCAAACATATCAAGAAGTTCACTTTAGAAAATCAGGGAATGTCTGCAGACGTTATCACTAAAGCATTTTTGGCAACAGAAGAAGAATTTCTTGCTGTGGTAAAGAAACAATGGCAACACAAACCACAGCTAGCGTCGGTTGGAGCTTGCTGTTTGGTAGGCGTAATATATAACGGAGAGCTCTATACTGCAAATGCAGGAGACTCTCGAGCAGTGTTGGGTAGACTGGACGAGGCTACAAAAGAGATTAAAGCGGTTCAACTATCCTATGAGCACAATGCTAGCCGAGAATCTGTCAGAGAGGAGCTACGCTCATTGCATCCTGATGATCCACAGATCGTACTGATGAAGCACACGGTCTGGCGCGTGAAGGGTCTCATTCAGATTTCAAGATCCATCGGCGACGCTTATCTAAAGAAGAAAGAGTTTAACCAAGCACCACTGTTGGCAAAGTTTCGGCTCCCAGAACCCTTTGAGAAGCCAATCCTTAAAGCCGAACCAACAGTACAAGTACAGAAACTACAACCTAGTGATCAATTTGTTATATTTGCATCAGATGGATTATGGGAGCATTTGAGCAATCAAGAAGTCGTTGACATTGTCCAAAGCAGTCCACGAAATGGAGTAGCGAAGAAACTGATAAAAACAGCACTTTGTGAAGCTGCAAAGAAAAGAGAAATGAGATACTCGGACTTGAAAAAGATTGATCGTGGAATACGGAGACATTTCCATGATGACATCACAGTTATAGTTTTGCATCTGGATTCATATAATCCACGTGCTCCCGTCGTTTCAATTAAAGGAGGTGGTGATTTTGGTATCGGTATTGTAAATGGCTAG 1146 0.4311 MVSAFRRIVSPCWRPSIVGENSGRYGDTSGRTDGLLWYKDSGRHANGEFSMAVVQANNLLEDHSQVESGPMSLIDGGTRGTFVGVYDGHGGPETARFVNERLFKHIKKFTLENQGMSADVITKAFLATEEEFLAVVKKQWQHKPQLASVGACCLVGVIYNGELYTANAGDSRAVLGRLDEATKEIKAVQLSYEHNASRESVREELRSLHPDDPQIVLMKHTVWRVKGLIQISRSIGDAYLKKKEFNQAPLLAKFRLPEPFEKPILKAEPTVQVQKLQPSDQFVIFASDGLWEHLSNQEVVDIVQSSPRNGVAKKLIKTALCEAAKKREMRYSDLKKIDRGIRRHFHDDITVIVLHLDSYNPRAPVVSIKGGGDFGIGIVNG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03969 381 Pfam Protein phosphatase 2C 78 326 IPR001932 -
Tsu04g03969 381 Gene3D - 38 361 IPR036457 -
Tsu04g03969 381 SMART PP2C_4 40 354 IPR001932 -
Tsu04g03969 381 CDD PP2Cc 49 356 IPR001932 -
Tsu04g03969 381 ProSiteProfiles PPM-type phosphatase domain profile. 48 356 IPR001932 -
Tsu04g03969 381 PANTHER ALPHABET, ISOFORM E-RELATED 7 373 - -
Tsu04g03969 381 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 7 373 - -
Tsu04g03969 381 ProSitePatterns PPM-type phosphatase domain signature. 82 90 IPR000222 GO:0043169
Tsu04g03969 381 SUPERFAMILY PP2C-like 58 358 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03969 Tsu-Chr4 48379000 48381789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03969 7 375 PP2C-type Phosphatase Gene Family AT3G12620 73.067 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03969 K01102 - gmx:100807559 588.571