Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03954 ATGGTTCAATCAAAGAAGTTCAGAGGTGTCAGGCAACGTCATTGGGGTTCTTGGGTTTCTGAAATTCGTCACCCACTTTTGAAGAGAAGGGTGTGGCTAGGAACATTTGAAACAGCAGAAGAAGCAGCAAGAGCTTATGATCAAGCAGCAATTTTAATGAGTGGTAGAAATGCCAAAACAAATTTCCCAATAACACAAACTCCTGAAGGTGATCCAAAAAGCAGTACAAGCACTGATCATGACAAACCTTCAACTTCATCAAAGGATCTAGAAGAAATCTTACACGCTAAGCTTCGAAAATGTGGCAAATTACCATCTCCTTCAATGACTTGTTTAAGACTTGACACAGAAAACTCTCACATTGGTGTATGGCAAAAACGTGCTGGGAAATGTTCTGATTCAAATTGGGTTATGACTGTTCAACTTggaaaaaagaagagtgtaaCGGAAGATAGTAGCGGTAGTAGCAGTAGTAGTGTTGCGCCTTCATCGGTGGTGGCAACGGAGGAGGAGATTGTACGAGGAGAGATTGATGAAGAAGATAGAATTGCACTTCAAATGATAGAAGAACTTCTTAATGATAAGAATTGTCCTAGTCCGTCAATTAACAACAATACTAAACAAGGAGATGATATTGAtaacactttttttctttaa 657 0.376 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSSTSTDHDKPSTSSKDLEEILHAKLRKCGKLPSPSMTCLRLDTENSHIGVWQKRAGKCSDSNWVMTVQLGKKKSVTEDSSGSSSSSVAPSSVVATEEEIVRGEIDEEDRIALQMIEELLNDKNCPSPSINNNTKQGDDIDNTFFL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03954 218 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Tsu04g03954 218 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Tsu04g03954 218 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Tsu04g03954 218 MobiDBLite consensus disorder prediction 74 89 - -
Tsu04g03954 218 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 204 - -
Tsu04g03954 218 MobiDBLite consensus disorder prediction 60 89 - -
Tsu04g03954 218 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Tsu04g03954 218 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Tsu04g03954 218 MobiDBLite consensus disorder prediction 146 167 - -
Tsu04g03954 218 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Tsu04g03954 218 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Tsu04g03954 218 MobiDBLite consensus disorder prediction 146 165 - -
Tsu04g03954 218 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 204 - -
Tsu04g03954 218 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03954 Tsu-Chr4 48237936 48239387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03954 1 193 AP2-EREBP Transcription Factor Family AT1G15360 64.356 1.94e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g03954 AP2 8.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03954 - - gsj:114375848 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03954 04 48237936 48239387 Tsu07g00649 07 5127241 5128392 ECH
Tsu04g03954 04 48237936 48239387 Tsu01g00694 01 6108943 6110341 ECH
Tsu04g03954 04 48237936 48239387 Tsu04g03954 04 48237936 48239387 ECH