Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03949 ATGAGTTTGTCAGCAAAGGGTCTCCTTGGTTTCTGCATAGAAGGATCCATTGAAGGAGAAACAGGAGTATCTTGGAAAGAGAGAACGAAACTTGCATTGGACGTGGCTAAAGGACTATTGTATCTACACGAAGAGTGTGAAGTCCGAATCATCAATTGCAATATAAATCCTCGAAATATACTTATGGACGAAGCATGGACTGCAAAAATATCTGATTTTGGATTTGCAAGGCTATTAAAGAGAGGCCATTCAAGAACTAAATTAGGGGATGATGGCACAAACAGCTACTTGGCACCTGAATGGCAGACGGAGGATGCATCAGTATCAGTAAAAGCAAATTAA 342 0.4035 MSLSAKGLLGFCIEGSIEGETGVSWKERTKLALDVAKGLLYLHEECEVRIINCNINPRNILMDEAWTAKISDFGFARLLKRGHSRTKLGDDGTNSYLAPEWQTEDASVSVKAN 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03949 113 Gene3D Transferase(Phosphotransferase) domain 1 5 112 - -
Tsu04g03949 113 SUPERFAMILY Protein kinase-like (PK-like) 19 105 IPR011009 -
Tsu04g03949 113 Pfam Protein kinase domain 20 102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03949 113 ProSiteProfiles Protein kinase domain profile. 1 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03949 113 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 22 112 - -
Tsu04g03949 113 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 22 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03949 Tsu-Chr4 48214643 48214984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03949 23 104 Receptor kinase-like Gene Family AT5G20050 45.122 1.80e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu04g03949 Pkinase 5.7e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03949 - - cam:101496142 170.629