Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03948 ATGGATGCCTATACTGCAACTATCACCTTCCTGCTGTTCATGTTCTTATCATTACCAAATACTAGAGCTCAAACACAACCACAATTAAATGAGAGAATAAAACCAGGTTCCTCACTTTCCCCCCCTATCAATGATTACCACTCTTCGTGGCTTTCCCGTTCTGGCCAATTTGCTTTTGGCTTTTATAAACAAGGCAACAATGGCTTTGTCGTTGGAATTTGGTTGGTCGGCAAGATACACAGCACACTGGTATGGACTGCAAACCGGGATGATCCTCCAGTAACCTCAACTGCAAAGCTACAATTTACCATGAATGGTACAATAATACTAACAGATCAACAGGGACAAGAGAAGCTTATTGTTGATGCTAATGCAAGAGCTTCCTCTGCCTCCATGCTTGATTCTGGGAACTTTGTACTATATGGCGACAATAACAATTCAAGCATCATATGGCAGAGTTTCGATCACCCAACTGATACTTTGTTGGGAGGTCAGTCTCTACCTTGTGGAGGTCAATTGTCCTCTAGTTTATCGGAGATCAACAGCTCAACAGGAAGGTTTCGTCTCAACATGCAGGCTGATGGAGATCTTGTTCTGTATCCAGCATACACAGCTGAAACAGAATGGGATGCTTATTGGACCTCAAATACTAAAGTCGATTATGGTGTCAATGTAAAATATCATCTTTACCTCAACAATACAGGTTTACTGCAGATCTTGAATACCAACAATGGTTCTAGCCGTATTACCACTTTGTCTTCTGCTGGAGATGATCAGCAAACTATTTATCGTGCAACCCTTGATATTGATGGGGTTTTTCGGCTGTATGCTTGTTATAACGATGGAAGCAACATTATTATGGGTAGTTGGCCGGGGAAGAATCCATGTGATGTAAATGGGTATTGTGGCTACAACAGTTTATGCACATTCGATGATGATAAACCAGTGTGCAATTGTCTCACGGGTTATAAATTTATAGATGCAAACATAGATACTCTTGGCTGCGAAAGTAACTATTCAAAAGTAGAGTGTAGAGGTGACAAAGATGATATGGACTTTTATAACATGGTCCCGGTGAACAATATTGTTTGGAACGACCGTCCTTATTTAAAAGATGAAGGTATGTCATCAGAAGACGAATGCTCATTTGCTTGTTTGGTTGATTGCAACTGTTGGGCTGCGATTTATGAAACTGGAAGCTGCAAGAGACAAGGACTGCCTTTGAGATATCTCAAACGAACACATGAAGCTGATGATTCTACAACGGCTTTCTTAAAGGTTGGAAACAGCAGCATCCAAAGCTCAAAGGGGGATGAAAACCCTTTTGCTTTTCCCCTTCCAATCAATACTACAAGTAACAAAGCAATAGTGCATATTATTGTTGTTACTTCCATATTTAGTATCGTTTTGTGTTCAGCGATTGTTATGTCCATCCATTACATGTACAAGATAAGAGTTTTAAAGTATAAAAGGCTAACAGAAACTGGGAACTTTGGAGGGCTGGATGAAGATTTGGCTTTAAGAAGGTTTACATACAATGAGTTGAGAAGAGCAACAAATCATTTCAAGGAAGAGTTGGGTAAGGGCGCTTTTGGAAAAGTTTACAAAGGAGCCTTAAACAAGGGAAAGAGATTGATTGCAGTGAAGAGACTGGAGAAGTTAGTGGAAGAAGGAGAGAGGGAGTTTCAAGCAGAAGTGAGAGCCATTGGGAAAACACACCACAGGAACCTAGTTAGATTGCTTGGTTTTTGTGCTGAGGGTTCAAAAAGGCTTCTGGTTTATGAATACATGAGCAATGGTTCGCTTGGAAAGCTTCTGTTTGGTGATCAAAGACGTCCGGATTGGGATGAGAGAGTACGAATAGCACTGGACATTGCTAGAGGGATCTTGTATCTCCACGAAGAGTGTGCTGCTCCAATCATTCATTGTGACATAAAACCTCAAAACATTTTGATGGATGAGTTTTGGACTGCCAAGATATCTGATTTTGGTCTTGCAAAACTTCTAATGCCGGACCAAACAAGAACCTTCACGGTGGTTAGAGGGACAAGAGGCTACATGGCTCCAGAATGGAACAAGAACGTGCCAATATCACTGAAGGCAGATGTTTATAGCTATGGAATAATGCTATTGGAAATTTTGTGTTGCAGAAGAAACATAGATGTTAATGTGTTGGAGCCTGAGGAGATTCTTCTCTCTGGTTGGGCTTATAAGTGCCTTGCTGCAGGAGAGGTAAATAAGATTATTCCTTGGGAAGTCATTGATAACAATGTCTTGGAAAGCATGATTAAGGTGGCACTTTGGTGTATCCAAGATGATCCTTTTCTCAGGCCAACAATGAAGGGTGTGGTGTTGATGTTAGAAGGAGTTACTGATATAGCAATTCCTCCTTGTCCTGTTTCCAATTCTGCATAA 2415 0.4083 MDAYTATITFLLFMFLSLPNTRAQTQPQLNERIKPGSSLSPPINDYHSSWLSRSGQFAFGFYKQGNNGFVVGIWLVGKIHSTLVWTANRDDPPVTSTAKLQFTMNGTIILTDQQGQEKLIVDANARASSASMLDSGNFVLYGDNNNSSIIWQSFDHPTDTLLGGQSLPCGGQLSSSLSEINSSTGRFRLNMQADGDLVLYPAYTAETEWDAYWTSNTKVDYGVNVKYHLYLNNTGLLQILNTNNGSSRITTLSSAGDDQQTIYRATLDIDGVFRLYACYNDGSNIIMGSWPGKNPCDVNGYCGYNSLCTFDDDKPVCNCLTGYKFIDANIDTLGCESNYSKVECRGDKDDMDFYNMVPVNNIVWNDRPYLKDEGMSSEDECSFACLVDCNCWAAIYETGSCKRQGLPLRYLKRTHEADDSTTAFLKVGNSSIQSSKGDENPFAFPLPINTTSNKAIVHIIVVTSIFSIVLCSAIVMSIHYMYKIRVLKYKRLTETGNFGGLDEDLALRRFTYNELRRATNHFKEELGKGAFGKVYKGALNKGKRLIAVKRLEKLVEEGEREFQAEVRAIGKTHHRNLVRLLGFCAEGSKRLLVYEYMSNGSLGKLLFGDQRRPDWDERVRIALDIARGILYLHEECAAPIIHCDIKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTVVRGTRGYMAPEWNKNVPISLKADVYSYGIMLLEILCCRRNIDVNVLEPEEILLSGWAYKCLAAGEVNKIIPWEVIDNNVLESMIKVALWCIQDDPFLRPTMKGVVLMLEGVTDIAIPPCPVSNSA 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03948 804 Gene3D Transferase(Phosphotransferase) domain 1 597 794 - -
Tsu04g03948 804 Pfam Protein kinase domain 522 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03948 804 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 26 802 - -
Tsu04g03948 804 Gene3D - 158 289 IPR036426 -
Tsu04g03948 804 Gene3D - 28 155 IPR036426 -
Tsu04g03948 804 ProSiteProfiles Bulb-type lectin domain profile. 36 153 IPR001480 -
Tsu04g03948 804 CDD B_lectin 51 157 IPR001480 -
Tsu04g03948 804 ProSitePatterns Protein kinases ATP-binding region signature. 526 549 IPR017441 GO:0005524
Tsu04g03948 804 Coils Coil 548 568 - -
Tsu04g03948 804 SMART blect_4 30 157 IPR001480 -
Tsu04g03948 804 Pfam S-locus glycoprotein domain 241 324 IPR000858 GO:0048544
Tsu04g03948 804 Gene3D Phosphorylase Kinase; domain 1 488 596 - -
Tsu04g03948 804 CDD STKc_IRAK 526 789 - -
Tsu04g03948 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Tsu04g03948 804 ProSiteProfiles Protein kinase domain profile. 520 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03948 804 SUPERFAMILY alpha-D-mannose-specific plant lectins 184 276 IPR036426 -
Tsu04g03948 804 PIRSF SRK 1 804 IPR024171 GO:0004674
Tsu04g03948 804 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 200 IPR036426 -
Tsu04g03948 804 SUPERFAMILY Protein kinase-like (PK-like) 506 788 IPR011009 -
Tsu04g03948 804 Pfam D-mannose binding lectin 82 167 IPR001480 -
Tsu04g03948 804 PANTHER RUST RESISTANCE KINASE LR10-RELATED 26 802 IPR045874 GO:0004672
Tsu04g03948 804 SMART serkin_6 520 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03948 Tsu-Chr4 48210991 48213819 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03948 458 792 Receptor kinase-like Gene Family AT5G45780 38.081 5.17e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu04g03948 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03948 - - ahf:112707609 979.548