Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03945 ATGGATGCCTATACTGCAACTATCACCTTCCTGCTGTTCATGTTCTTATCATTACCAAATACTAGAGCTCAAACACAACCACAATTAAATGAGAGAATAAAACCAGGTTCCTCACTTTCCCCCCCTATCAGTGATTACCAATCTTCGTGGCTTTCCCGTTCTGGCCTATTTGCTTTTGGCTTTTATAAACAAGGCAACAATGGCTTTGTCGTTGGAATTTGGTTGGTCGGCAAGATACACAGCACACTAGTATGGACTGCAAACCGGGATGATCCTCCAGTAACTTCAACTGCAAAGCTACAATTTACCATGAATGGTACAATAATACTAACAGATCAACAGGGACAAGAGAAGCTTATTGTTGATGCTAATGCAAGAGCTTCCTCTGCCTCCATGCTTGATTCTGGGAACTTTGTACTATATGGCGACAATAACAATTCAAGCATCATATGGCAGAGTTTCGATCACCCAACTGATACTTTGTTGGGTAGTCAATCTCTACCTTGTGAAGGCCAACTGTCCTCCAGTTTATCGGAGACCAACAGCTCAACTGGAAGGTTTCATCTCAACATGCAGGTTGATGGAAATCTTGTTCTGTATCCAGCATACATAGCTGAAACAGGTTGGGATGCTTATTGGGCGTCAGATACTGTTCGTGCCAATGTCAAATATTATCTTTACCTCAACAATACAGGTTCACTGCAGATCTGGAATAGCGGCAATGATTCTAGCATTGTTACAACTTTATCTTATGCTGAAAAAGACCAGCAGAAGACTGGAGGATATCAGACTATTTATCGTGCAACCCTTGATTTTGATGGGGTTTTTCGGCTTCGTGCTCATCATGTCAACAACGGAAGTGACAAAATTATTGCAAATGCAAATGAAAAGACTCTTGGCTGCGAAAGGAACTATTCGAAAGCAGAGTGTAGAGGTGGGAAAGATGGTGTTGCCTTTTATGACATGGTCCCGATGAACAATATTGTATGGAAAGACCATCCTTATTTTGAGACTGAAGATATATCATCTGAACAACATTGCTCATTTGCTTGTTTGGTTGATTGCAACTGTTGGGCTGCACTGTATGAGGGATCAAGATGCAAGAAACAAGGGTTTCCTTTGAGATATGTCAGTAGGACACATGAAGGCGACGAATCGAGCACGGCTTTCTTAAAGGTGGGGAAAAACAGCATCAAACACTGGAAGTGGAATGATACACACTTTTATCCACAGCCACCTCCAACCAAGACTACAAGTAACAAAGCAGTGGTGCATATTATTGTTGTTACATCAATATTTACTGTGCTTTTGTCTTCAGCGATTGTAATATCCAGCCATTACATTTACAAGATTCGTGTATTGAGGTACAAAAGGTTAACGGACACTGGGAACATAGGGCAGAATGAAGAGGTGGCTTTGAGAAGGTTTTTATATAACGAGCTGAAAAGAGCAACAAATCATTTTAAGGAAGAGTTGGGTAAGGGCTCTTTTGGATCAGTTTACAAAGGGGCCTTAAACAAAGGTAAGAGATTAATTGCAGTGAAGAGACTAGAGAAGGTGGTGGAAGAAGGGGAAAAGGAGTTTCAAGCAGAAGTGAGATCCATTGGGAAAACTCACCACAGGAACCTAGTTAGATTGCTGGGTTTTTGTGTTGAGGGTTCGAAAAGGCTTCTGGTTTACGAATACATGAGCAACGGTTCACTTGGAAAGCTTCTCTTTGGTGATCAAAGACGTCCAGATTGGAATGAGAGAGTAAGAATAGCACTGGATATTGCAAGAGGGATCTTGTATCTCCATGAAGAGTGTGATGCTCCAATCATTCATTGCGACTTAAAGCCTCAGAACATTTTGATGGATGAGTTTTGGACTGCCAAGATATCTGATTTTGGGCTTGCGAAACTTTTAATGCCAGACCAAACTAGAACATTCACGATGGTCAGAGGGACAAGAGGGTACATGGCCCCGGAATGGAACAAGAATGTGCCAATATCAGTGAAAGCAGATGTTTATAGCTATGGAATAGTGTTGTTGGAACTCTTATGTTGCAGAAGAAACCTAGATGTTAATGTGTTGGAATCTGAGGAGATTATTCTCTCTGGTTGGGCTTATAAGTGCTTTGTTGCAGGAGAGGTAAATAAACTTGTTCCTTGGGAAGTCATTGATAAAAATGTCATGGAAAATATAGTTAAGGTGGCACTTTGGTGTATCCAGGATGATCCTCTTATCAGGCCAACAATGAAGGGTGTGGTTTTGATGTTAGAAGGTATTACTGATATAGCAATTCCTCCTTGTCCAGATTTAAGTTCTTCATGA 2313 0.4107 MDAYTATITFLLFMFLSLPNTRAQTQPQLNERIKPGSSLSPPISDYQSSWLSRSGLFAFGFYKQGNNGFVVGIWLVGKIHSTLVWTANRDDPPVTSTAKLQFTMNGTIILTDQQGQEKLIVDANARASSASMLDSGNFVLYGDNNNSSIIWQSFDHPTDTLLGSQSLPCEGQLSSSLSETNSSTGRFHLNMQVDGNLVLYPAYIAETGWDAYWASDTVRANVKYYLYLNNTGSLQIWNSGNDSSIVTTLSYAEKDQQKTGGYQTIYRATLDFDGVFRLRAHHVNNGSDKIIANANEKTLGCERNYSKAECRGGKDGVAFYDMVPMNNIVWKDHPYFETEDISSEQHCSFACLVDCNCWAALYEGSRCKKQGFPLRYVSRTHEGDESSTAFLKVGKNSIKHWKWNDTHFYPQPPPTKTTSNKAVVHIIVVTSIFTVLLSSAIVISSHYIYKIRVLRYKRLTDTGNIGQNEEVALRRFLYNELKRATNHFKEELGKGSFGSVYKGALNKGKRLIAVKRLEKVVEEGEKEFQAEVRSIGKTHHRNLVRLLGFCVEGSKRLLVYEYMSNGSLGKLLFGDQRRPDWNERVRIALDIARGILYLHEECDAPIIHCDLKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTMVRGTRGYMAPEWNKNVPISVKADVYSYGIVLLELLCCRRNLDVNVLESEEIILSGWAYKCFVAGEVNKLVPWEVIDKNVMENIVKVALWCIQDDPLIRPTMKGVVLMLEGITDIAIPPCPDLSSS 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03945 770 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672|GO:0006468
Tsu04g03945 770 CDD B_lectin 42 157 IPR001480 -
Tsu04g03945 770 Pfam D-mannose binding lectin 82 167 IPR001480 -
Tsu04g03945 770 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 26 290 - -
Tsu04g03945 770 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 293 766 - -
Tsu04g03945 770 PIRSF SRK 1 290 IPR024171 GO:0004674
Tsu04g03945 770 PIRSF SRK 284 770 IPR024171 GO:0004674
Tsu04g03945 770 ProSitePatterns Protein kinases ATP-binding region signature. 492 515 IPR017441 GO:0005524
Tsu04g03945 770 CDD STKc_IRAK 492 756 - -
Tsu04g03945 770 PANTHER RUST RESISTANCE KINASE LR10-RELATED 293 766 IPR045874 GO:0004672
Tsu04g03945 770 ProSiteProfiles Protein kinase domain profile. 486 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03945 770 Gene3D - 169 287 IPR036426 -
Tsu04g03945 770 Pfam Protein kinase domain 488 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03945 770 Gene3D - 27 155 IPR036426 -
Tsu04g03945 770 Gene3D Phosphorylase Kinase; domain 1 453 562 - -
Tsu04g03945 770 SMART serkin_6 486 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03945 770 SMART blect_4 40 157 IPR001480 -
Tsu04g03945 770 SUPERFAMILY Protein kinase-like (PK-like) 471 754 IPR011009 -
Tsu04g03945 770 ProSiteProfiles Bulb-type lectin domain profile. 36 153 IPR001480 -
Tsu04g03945 770 SUPERFAMILY alpha-D-mannose-specific plant lectins 183 241 IPR036426 -
Tsu04g03945 770 PANTHER RUST RESISTANCE KINASE LR10-RELATED 26 290 IPR045874 GO:0004672
Tsu04g03945 770 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 200 IPR036426 -
Tsu04g03945 770 Gene3D Transferase(Phosphotransferase) domain 1 563 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03945 Tsu-Chr4 48199315 48201742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03945 473 755 Receptor kinase-like Gene Family AT1G60800 44.863 4.86e-68 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu04g03945 Pkinase 4.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03945 - - ahf:112707609 932.169