Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03944 ATGGCTTCCATGCTTGTTCTGTCATTCTTACTGTTCTTCTTCATGCTATTTACATTAGAAGAAGCCACACACACTACAACTGAAAATAATAACTCCAGTGAAATTCCATTGGGGTCTTGGCTCTCTCCTAAAGGCGAAAATACTTCATGGCGATCAAGTTCTGGCCATTTTGCTTTTGGGTTTTACCCACAAGGTAGTGGTTTTGCTGTTGGAATATGGTTGGTTAGTCCATCTGAAAACACAACCACTGTTGTTTGGACTGCTAACCGTGATGATCCAACAGTCTCCTCTGAATCTATGTTGAATTTGACCAAGCAAGGCCTGCTTCTTCAAAATGGAAAGGGAGATTCACCTATGAATATAGACTCGAGTCGTTATTATTCATATTCGTTAGTCTCATGGGGATCTATGCTTGATTCTGGAAACTTTGTGCTTTATGATGAGAATCCTGATCTTATATGGCAAAGCTTTGATGACCCAACTGACACCATCTTAGGAGGTCAGAATTTCACTGAAGGTGATCATTTACACTCTAGTATATCCAAATCAGACCATTCGAGTGGGCTTTTCTATCTCGAAGTGACAAGTGATGGAAACGTTGTTGCTTACCCTTATTACAGTTTAAAAAGTGTTGAGGATGCTTACTGGGATTCAAACACTTCGTCGGATTACCAACAACATCTCAGTCTTAGCATTCAAGGCTCTCTTTGCCTAGATGATACTAAAATGTCTCGAACTATGTCGGTTAGACCATGCAATCCTACATATCGACGACAATCATCTTACCCCTGCCAACTACGCAATCTAACAGGTTCTGTTGGTAGGCTATGTTTCAACAATAGCAATGAGCCTGGAAAAAAGTCACACAACAAAACAACTTCAATCTACCGTGCAACACTTGATGTGGATGGAATCTTGAGATTGTATGAGCACCAATTTCACTTTGAGCAAGGCAACAATAGCTCTCATGTGGTAATGCTGTGGCAAGCACTTCAAGGTACATGTCAAGTGAAGGGCTTTTGTGGGTTGAACAGTTATTGCACCTCCAACGAGAGTGGCGATGCTGTCTGTAAGTGTTATCCTGGTTTCATCCCTTCCAACACTAAAAGTAATCCTAACATGCCTATGGTTTGCATTCAAATGCTTAGCAAAGATGACTGTGAAAGAAATAAAGATGGAACATTGTTGTATAATTTTACTCACTTTAAGAATATGTATTGGGGTGATATTCCATATTCTGTTATACCCGTGTCGAAGATGGAAACTTGTGAGAAGGCTTGCCAACAAGATTGTGTTTGTGTGGGAGCAATATATACAAACGGTAGCTGCAATAAATATAGTCTTCCACTTATTTATGGCAGTGTTCAAAATGATTCTTCCACTGTGTCTGTGGCCCTAGTAAAGGTTCCTTCTTCAACAATTGCCATTATTTCACCTACAACCTCAAACGACAATAACGTGCCTAAGCCCAAGGTTGCTGTTGACAACAAGAGGAGTCTGATAATGATCTTATCTTTTACTTTGGGTGTATGTTCATTAATTTGCTTGGCCATTGCATTGTCCATTTTCTTCACTTACAGGCGTCAAGTTAATAGATATGCAATGTTGTCTGAGAGTGAAAAACTTGATTTTACAGAAGAATGTTCCTTgcattcattttcttttgaagaacTTGCAAAATCAACTGGGGGATTTTCAGAAGAGATAGGGAGAGGATCATTTGGAGCTGTCTATAAAGGCAAAATAGGCGACAATAACAGAAGTATTGCTGTGAAGAGATTGGAGGAGAGAATTGCTGATGAAGGAGAGAGGGAATTCCGAGCTGAAATTACTGCTATTGCTCGAACTCATCATAGGAATTTGGTTAAGCTTATTGGCTTTTGTATAGAAGGTTCCAACAAGCTTCTTGTTTATGAATTTGTCAGCAAAGGGTCTCTTGCAAATGTCCTTTTTGAAGGTGAAGTGAAACTATCTTGGAAAGAGAGAATGAAACTCGCGTTGGATGTGGCTAGAGGAATATTGTATCTACACGAAGAGTGTGAAGTCCGAATCATTCATTGCAATATAAATCCTCATAATATACTTATGGATGAATCATGGACTGCAAAAATATCTGATTTTGGATTGGCAAGACTTTCAAAGAGGAGCcattcaaaaactaaaacagaGGAGGATGGCACAAGCAGGTACTTGGCACCCGAATGGCAGAAGGAGGATGCATCAGTATCGGTAAAAGCTGACATTTACAGTTTTGGTGTGGTATTATTGGAGATTATATGCTGCAGAAGAAGTATAGAGATGAGTGATATTTCCTCAGCTGATGAAATTCTATTTTCCAGTTGGGTATATCAATGTTTTGCATCAGGACAGTTAAACAAGCTAGTCACACATGATGAAAAAGATGTAGATTGGAAGATATTGGAAAGAATGGTGAAGGTGGGGTTGTGGTGTGTGCAAGACCACCAATCTCTCCGTCCTACAATGAAGAATGTAATCTTGATGTTGGAAGGTTTGAAAGATATTCCAGTTCCTCCCTCTCCAGCTCGCTTGCTTGAATAG 2559 0.3916 MASMLVLSFLLFFFMLFTLEEATHTTTENNNSSEIPLGSWLSPKGENTSWRSSSGHFAFGFYPQGSGFAVGIWLVSPSENTTTVVWTANRDDPTVSSESMLNLTKQGLLLQNGKGDSPMNIDSSRYYSYSLVSWGSMLDSGNFVLYDENPDLIWQSFDDPTDTILGGQNFTEGDHLHSSISKSDHSSGLFYLEVTSDGNVVAYPYYSLKSVEDAYWDSNTSSDYQQHLSLSIQGSLCLDDTKMSRTMSVRPCNPTYRRQSSYPCQLRNLTGSVGRLCFNNSNEPGKKSHNKTTSIYRATLDVDGILRLYEHQFHFEQGNNSSHVVMLWQALQGTCQVKGFCGLNSYCTSNESGDAVCKCYPGFIPSNTKSNPNMPMVCIQMLSKDDCERNKDGTLLYNFTHFKNMYWGDIPYSVIPVSKMETCEKACQQDCVCVGAIYTNGSCNKYSLPLIYGSVQNDSSTVSVALVKVPSSTIAIISPTTSNDNNVPKPKVAVDNKRSLIMILSFTLGVCSLICLAIALSIFFTYRRQVNRYAMLSESEKLDFTEECSLHSFSFEELAKSTGGFSEEIGRGSFGAVYKGKIGDNNRSIAVKRLEERIADEGEREFRAEITAIARTHHRNLVKLIGFCIEGSNKLLVYEFVSKGSLANVLFEGEVKLSWKERMKLALDVARGILYLHEECEVRIIHCNINPHNILMDESWTAKISDFGLARLSKRSHSKTKTEEDGTSRYLAPEWQKEDASVSVKADIYSFGVVLLEIICCRRSIEMSDISSADEILFSSWVYQCFASGQLNKLVTHDEKDVDWKILERMVKVGLWCVQDHQSLRPTMKNVILMLEGLKDIPVPPSPARLLE 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03944 852 PIRSF SRK 1 852 IPR024171 GO:0004674
Tsu04g03944 852 Gene3D - 157 251 IPR036426 -
Tsu04g03944 852 Gene3D Transferase(Phosphotransferase) domain 1 641 841 - -
Tsu04g03944 852 SUPERFAMILY Protein kinase-like (PK-like) 546 836 IPR011009 -
Tsu04g03944 852 Gene3D - 29 156 IPR036426 -
Tsu04g03944 852 ProSitePatterns Protein kinases ATP-binding region signature. 569 592 IPR017441 GO:0005524
Tsu04g03944 852 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 850 - -
Tsu04g03944 852 Gene3D Phosphorylase Kinase; domain 1 527 640 - -
Tsu04g03944 852 Pfam D-mannose binding lectin 83 170 IPR001480 -
Tsu04g03944 852 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 220 IPR036426 -
Tsu04g03944 852 SMART blect_4 41 160 IPR001480 -
Tsu04g03944 852 Pfam Protein kinase domain 566 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03944 852 ProSiteProfiles Protein kinase domain profile. 563 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03944 852 ProSiteProfiles Bulb-type lectin domain profile. 32 158 IPR001480 -
Tsu04g03944 852 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 1 850 - -
Tsu04g03944 852 Pfam S-locus glycoprotein domain 288 366 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03944 Tsu-Chr4 48190402 48198232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03944 416 847 Receptor kinase-like Gene Family AT5G38280 33.184 1.70e-64 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tsu04g03944 Pkinase 4.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03944 - - cam:101496142 1226.85