Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03943 ATGATTGTGAAATTGGGCTTCCTACTGATTTTGGTGATGACTTTGGCAGTTAAAGCCCAACTAAAAAGTGGATTTTATTCAACTTCATGTCCAACAGCTGAGTCCATCGTACGGTCCACAGTTGTATCTTACTTCAACAAAGATCCAACCATTGCTCCTGCCCTTCTCAGGCTTCATTTTCATGATTGCTTTGTCCAAGGCTGCGATGGATCCATACTGATTGCCGGCTTCTCTGCAGAAAGGAATGCATTGACAAACCTTGGTCTAAGAGGTTTTGAAGTGATAGATAATGCAAAATCACAAATAGAGGCCATATGCCCTGGAATAGTCTCATGTGCTGACATTCTAGCATTGGCAGCTCGTGATGCCGTCGATTTGAGTGATGGCCCAAGTTGGTCAGTACCCACAGGAAGAAGAGATGGAAGAATTTCTTTATCATCTCAAGCCTCAAATTTACCTTCTCCACTTGAACCTGTTTCTGTCCATAGACAAAAATTTGCTGCCAAAGGTCTAGATGATCATGACCTTGTTACCTTACTTGGTGCACATACCATAGGCCAAACAGATTGCAGATTCTTTAGTTATCGTCTATACAATTTCACAACCACCGGCAATGCTGATCCTACTATAAACCAAGCTTTCTTAGCTCAACTTAAAGTACTATGTCCAAAAAATGGTGATGGCTTGAGAAGGGTGGCTTTGGACAAAGATAGTCCAGCCAAATTTGATGTGAGTTTCTTCAAAAATGTACGCGATGGTAACGGGATTCTAGAGTCAGACCAAAGGCTGTGGGAAGATTCTGCTACAAAAAGGGTGGTGCAAAATTATGGTGGGAATTTTAGAGGGTTATTGGGGTTgagatttgattttgaatttccAAAGGCTATGATTAAGTTGAGTAGTGTAGATGTGAAGACTGGTGTTGATGGAGAGATTAGAAAAGTGTGCTcaaaatttaattga 963 0.4019 MIVKLGFLLILVMTLAVKAQLKSGFYSTSCPTAESIVRSTVVSYFNKDPTIAPALLRLHFHDCFVQGCDGSILIAGFSAERNALTNLGLRGFEVIDNAKSQIEAICPGIVSCADILALAARDAVDLSDGPSWSVPTGRRDGRISLSSQASNLPSPLEPVSVHRQKFAAKGLDDHDLVTLLGAHTIGQTDCRFFSYRLYNFTTTGNADPTINQAFLAQLKVLCPKNGDGLRRVALDKDSPAKFDVSFFKNVRDGNGILESDQRLWEDSATKRVVQNYGGNFRGLLGLRFDFEFPKAMIKLSSVDVKTGVDGEIRKVCSKFN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03943 320 CDD secretory_peroxidase 20 319 IPR033905 GO:0004601|GO:0042744
Tsu04g03943 320 Pfam Peroxidase 37 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 SUPERFAMILY Heme-dependent peroxidases 20 320 IPR010255 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PANTHER PEROXIDASE 10 318 - -
Tsu04g03943 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 175 185 IPR019793 -
Tsu04g03943 320 PANTHER PEROXIDASE 25-RELATED 10 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PRINTS Plant peroxidase signature 90 103 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PRINTS Plant peroxidase signature 109 119 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PRINTS Plant peroxidase signature 128 143 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PRINTS Plant peroxidase signature 174 186 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 Gene3D - 24 320 - -
Tsu04g03943 320 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PRINTS Haem peroxidase superfamily signature 110 127 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PRINTS Haem peroxidase superfamily signature 128 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PRINTS Haem peroxidase superfamily signature 175 190 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 Gene3D Peroxidase, domain 2 153 299 - -
Tsu04g03943 320 ProSiteProfiles Plant heme peroxidase family profile. 20 320 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu04g03943 320 ProSitePatterns Peroxidases active site signature. 52 63 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03943 Tsu-Chr4 48177018 48178478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03943 7 320 Peroxidase AT2G41480 73.651 3.12e-177 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03943 K00430 - gmx:100816487 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03943 04 48177018 48178478 Tsu04g03943 04 48177018 48178478 ECH