Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03936 ATGACTGGAGAAGCAGTTAACCCTAAAGCATACCCTTTGGCTGATGCTCAGCTAACCATAACCATAATGGATCTTGTTCAGCAAGCTGCTAATTACAAGCAACTTAAGAAGGGTGCTAATGAAGCTACTAAGACACTTAATAGAGGAATATCTGAGTTTGTTGTTATGGCTGCTGATGCTGAACCTCTCGAAATTCTTCTCCATCTTCCTCTGCTCGCTGAAGACAAGAATGTTCCTTATGTGTTTGTCACATCAAAACAAGCACTTGGACGTGCTTGTGGTGTCACTAGGCCAGTGATTGCTTGTTCTGTGACGACTAATGAAGGCAGTCAATTGAAATCTCAGATTCTGCAACTCAAGGATGCTATTGAGAAGTTGCTGATCTGA 387 0.4212 MTGEAVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVTSKQALGRACGVTRPVIACSVTTNEGSQLKSQILQLKDAIEKLLI 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03936 128 Gene3D - 1 128 IPR029064 -
Tsu04g03936 128 PRINTS High mobility group-like nuclear protein signature 8 21 IPR002415 GO:0003723|GO:0005730
Tsu04g03936 128 PRINTS High mobility group-like nuclear protein signature 21 36 IPR002415 GO:0003723|GO:0005730
Tsu04g03936 128 PRINTS High mobility group-like nuclear protein signature 38 48 IPR002415 GO:0003723|GO:0005730
Tsu04g03936 128 PRINTS High mobility group-like nuclear protein signature 82 94 IPR002415 GO:0003723|GO:0005730
Tsu04g03936 128 PANTHER NHP2-LIKE PROTEIN 1 4 128 - -
Tsu04g03936 128 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 22 111 IPR004038 -
Tsu04g03936 128 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 4 128 - -
Tsu04g03936 128 SUPERFAMILY L30e-like 6 126 IPR029064 -
Tsu04g03936 128 PRINTS Ribosomal protein L7A/RS6 family signature 35 49 IPR018492 -
Tsu04g03936 128 PRINTS Ribosomal protein L7A/RS6 family signature 54 67 IPR018492 -
Tsu04g03936 128 PRINTS Ribosomal protein L7A/RS6 family signature 70 80 IPR018492 -
Tsu04g03936 128 PRINTS Ribosomal protein L7A/RS6 family signature 80 94 IPR018492 -
Tsu04g03936 128 ProSitePatterns Ribosomal protein L7Ae signature. 73 90 IPR004037 GO:0042254|GO:1990904
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03936 Tsu-Chr4 48124089 48125836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03936 35 118 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 30.588 4.36e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03936 K12845 - jre:109010760 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03936 04 48124089 48125836 Tsu04g03936 04 48124089 48125836 ECH